Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01121 ATGGCTACCTCTTCTATACTCCTCTTGCTTTCATGCTTCATACTAAACCTTGCATGTTTATCACAAACTGCAGTCCTGAACATGATAGACTCATGCAGGCTTGCCAAATCCAATTGGGCATCAAATCGCCAAGCCTTGGCTGATTGTGCCATTGGCTTTGGAAGTGATACGATTGGAGGCAAATATGGAGCAATATATCAAGTCACAGATCCCTCTGATGATCCCATAAAACCAAAAGCAGGCACACTTCGTCATGCTGTGGTCCAAACACAACCCCTTTGGATCATTTTTGCCAAAGATATGACTATTCAGCTCAAGAACGAGCTTATCATGAATAGCTACAAGACCATTGATGGAAGAGGTGCTAAAGTGGAGATTGCAAATGGCCCCTGCATTACAATACAAGGTGTTAGCCATGTTATCATACATGGCATTAGCATCCATGATTGCAGACCAAGCAAAGCTGGCCTTGTAATGAGCACCCTGTCTCATGTTGGCCATCGCCAAGGCTCTGATGGAGATGCCATTAGCATATTTGCCTCCTCAAATGTTTGGATTGATCACTGTTTTTTGGCTCGTTGTGTTGATGGCTTGATTGATATTATTCATGCCTCAACTGCGATTACCATTTCTAACAATTACTTTACCCAGCATGACAAAGTTATGCTGCTAGGTCACAGCGATGAATACTCAGCTGATAAAATAATGAAAGTAACAATAGCCTTCAACCGATTTGGTAGTGGTCTAATTGAGAGGATGCCAAGGGTGAGATTTGGTTATGCCCATGTGGTGAACAACAAATATGATGGGTGGAAGATGTATGCCATAGGGGGGAGTTCTAACCCAACCATTCTAAGTGAAGCAAACTACTATGTAGCTCCGAATAACCCTTCTTCAAAACAGGTTACCAAAAGGGAAATGAATGGAAAATTGAAGAGTTGGAAATGGAGGTCTTCTAAGGATGCATTCCTAAACGGTGCTTATTTTGTTCCATCAGGCTATGGAAGTTGTGATCCAAACTATTCACCTTCTCAATCTTTTACTGCTGCACCTGCTTCATTGGTGCCTTCTATAACTCTAAACGCAGGTCCCCTAACTTGTGTTGTTGGTAAACCATGCTAG 1122 0.4234 MATSSILLLLSCFILNLACLSQTAVLNMIDSCRLAKSNWASNRQALADCAIGFGSDTIGGKYGAIYQVTDPSDDPIKPKAGTLRHAVVQTQPLWIIFAKDMTIQLKNELIMNSYKTIDGRGAKVEIANGPCITIQGVSHVIIHGISIHDCRPSKAGLVMSTLSHVGHRQGSDGDAISIFASSNVWIDHCFLARCVDGLIDIIHASTAITISNNYFTQHDKVMLLGHSDEYSADKIMKVTIAFNRFGSGLIERMPRVRFGYAHVVNNKYDGWKMYAIGGSSNPTILSEANYYVAPNNPSSKQVTKREMNGKLKSWKWRSSKDAFLNGAYFVPSGYGSCDPNYSPSQSFTAAPASLVPSITLNAGPLTCVVGKPC 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01121 373 SMART amb_all 100 297 IPR002022 -
Vimu2g01121 373 SUPERFAMILY Pectin lyase-like 27 364 IPR011050 -
Vimu2g01121 373 PANTHER PECTATE LYASE 18-RELATED 24 371 IPR045032 GO:0030570
Vimu2g01121 373 Gene3D - 26 366 IPR012334 -
Vimu2g01121 373 PRINTS Pollen allergen Amb family signature 108 124 IPR018082 -
Vimu2g01121 373 PRINTS Pollen allergen Amb family signature 172 193 IPR018082 -
Vimu2g01121 373 PRINTS Pollen allergen Amb family signature 49 66 IPR018082 -
Vimu2g01121 373 PRINTS Pollen allergen Amb family signature 344 367 IPR018082 -
Vimu2g01121 373 PRINTS Pollen allergen Amb family signature 252 271 IPR018082 -
Vimu2g01121 373 PRINTS Pollen allergen Amb family signature 72 97 IPR018082 -
Vimu2g01121 373 PRINTS Pollen allergen Amb family signature 274 293 IPR018082 -
Vimu2g01121 373 PRINTS Pollen allergen Amb family signature 314 338 IPR018082 -
Vimu2g01121 373 Pfam Pectate lyase 106 291 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01121 Vimu-Chr2 7428533 7430160 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g01121 27 373 Polysaccharide Lyase AT1G11920 69.253 0.0 513
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01121 K01728 - gmx:100799106 666.766