Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01119 ATGGACAAAGGATGGGGACTCACCCTTGATACCTCTTCCTCCCAATCTCTCTCATTATTCCCTTCCAAACACCCTTCCACTTCTTTCTCCAAACTCACCAGCGACACCATGTTCCCTCTCCTCGGATTCCCCGTCAACCTTAGCCGTCCCGCTGCCAAGGACGACGAACACAACCGCAAAGTCGTCGGTGAAGTCGACTTCTTCTCTGATAGAATCACCAAACCAACCTCCCCACCCTCCCACGACCAACACGTTAAACCCAACATCGTCAAGAAGGAAATTGTTGAAACACCTCTCCACGTTAATACTGGTTTACAACTCCTTACTGCAAACACCGGAAGTGACCAATCGACCGTCGATGATGGGGTTTCATCGGATGCAGAAGATAAGCGAGCCAAAACCACCGAGCTTGCACAGATGCAAGTGGAGCTTCAACGCATGAACGAAGAGAACAAGAAGCTGAAAGAGATGCTAAGCCATGTGACCGGTAACTACACGGCCTTGCAGATGCATCTCATGACATTAATGCATCAGAACCAGCGCACAGTGAACACAGAAAATGAGGTTGTTCAGGGAAAGGCGGAGGATAAAAATCATGCTGTTGGTGGAGGAAAGGTTCCAAGACAGTTCCTTGATATAGGTCCCAGTGGCGCAGCCGAAGCAGATGACCAAGTGTCTGACTCTTCTTCCGATGAGAGAACACGATCGAGCACACCTCAGAACAATAACATTGAAGTTGGAACAAGAGACGGTGCGAGAAATGTTAATGCCAAAAGAGAGTTGGGTAGGGAAGAGAGCCCAGACTCAGAATCCCAAGGTTGGGGTCCTAATAAGCTTCAGAAAGTTAACCCTTCCAATGCTATGGATCAGTCCACTACAGAAGCCACAATGAGAAAAGCTCGTGTCTCAGTTCGTGCCCGATCAGAAGCTCCCATGATAAGTGATGGGTGCCAATGGCGAAAATATGGACAAAAAATGGCCAAGGGGAACCCGTGTCCTCGAGCATATTATAGATGCACTATGGCAGTTGGTTGCCCAGTTCGCAAACAAGTTCAACGTTGTGCTGAGGATAGAACAATTTTGGTTACAACTTATGAAGGTACACATAACCATCCACTGCCACCTGCCGCTATGGCCATGGCGTCAACCACTACAGCTGCTGCTAGCATGTTACTGTCAGGGTCAATGTCCAGTGCAGATGGAATTATGAACCCCAATTTGCTAGCCAGAGCAATCATTCCTTGCAATTCTAGCATGGCAACACTATCAGCTTCAGCACCATTTCCAACTGTGACTTTGGACCTCACACATAACCCGAACCCGTTGCAGTTTCAGAGACCAGCTACCCCATTCCAAGTGCCCTTCCTCCAAGGGCAGCCTCAGAACTTTGGATCCGGAGCCACCCCAATTGCACAAGCACAAGCACTTTATAATCAATCAAAGTTCTCTGGTCTTCAACTATCTCAGGAAGTAGGTTCTTCCCAGTTGGCCGCACAAGCTCCCAGACCACCCTTACAGTCTAGCCAGCAACCCTCGTCGGCTGATACAGTCAGTGCCGCCGCGGCCGCTATCACCTCCGATCCAAACTTCACCGCCGTCCTCGCCGCCGCCATCTCCTCTATCATAGGCGGTGCTCATAATGCAAACAATAACACCAATAACAACAACAGCACAAGCAGGACTACCATCAGCAGCTTTTCAGGAAACTGA 1710 0.493 MDKGWGLTLDTSSSQSLSLFPSKHPSTSFSKLTSDTMFPLLGFPVNLSRPAAKDDEHNRKVVGEVDFFSDRITKPTSPPSHDQHVKPNIVKKEIVETPLHVNTGLQLLTANTGSDQSTVDDGVSSDAEDKRAKTTELAQMQVELQRMNEENKKLKEMLSHVTGNYTALQMHLMTLMHQNQRTVNTENEVVQGKAEDKNHAVGGGKVPRQFLDIGPSGAAEADDQVSDSSSDERTRSSTPQNNNIEVGTRDGARNVNAKRELGREESPDSESQGWGPNKLQKVNPSNAMDQSTTEATMRKARVSVRARSEAPMISDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILVTTYEGTHNHPLPPAAMAMASTTTAAASMLLSGSMSSADGIMNPNLLARAIIPCNSSMATLSASAPFPTVTLDLTHNPNPLQFQRPATPFQVPFLQGQPQNFGSGATPIAQAQALYNQSKFSGLQLSQEVGSSQLAAQAPRPPLQSSQQPSSADTVSAAAAAITSDPNFTAVLAAAISSIIGGAHNANNNTNNNNSTSRTTISSFSGN 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01119 569 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 107 558 IPR044810 GO:0003700
Vimu2g01119 569 MobiDBLite consensus disorder prediction 252 267 - -
Vimu2g01119 569 ProSiteProfiles WRKY domain profile. 308 374 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu2g01119 569 MobiDBLite consensus disorder prediction 7 24 - -
Vimu2g01119 569 SMART WRKY_cls 313 373 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu2g01119 569 Gene3D WRKY domain 298 375 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu2g01119 569 MobiDBLite consensus disorder prediction 112 132 - -
Vimu2g01119 569 MobiDBLite consensus disorder prediction 546 569 - -
Vimu2g01119 569 MobiDBLite consensus disorder prediction 1 24 - -
Vimu2g01119 569 Coils Coil 130 164 - -
Vimu2g01119 569 MobiDBLite consensus disorder prediction 231 249 - -
Vimu2g01119 569 Pfam WRKY DNA -binding domain 315 372 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu2g01119 569 SUPERFAMILY WRKY DNA-binding domain 306 374 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu2g01119 569 MobiDBLite consensus disorder prediction 195 302 - -
Vimu2g01119 569 FunFam probable WRKY transcription factor 31 298 375 - -
Vimu2g01119 569 MobiDBLite consensus disorder prediction 270 298 - -
Vimu2g01119 569 MobiDBLite consensus disorder prediction 493 514 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01119 Vimu-Chr2 7413230 7415576 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g01119 1 556 WRKY Transcription Factor Family AT1G62300 51.741 7.56e-162 471
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vimu2g01119 WRKY 6.7e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01119 - - pvu:PHAVU_006G147800g 978.008
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g01119 2 7413230 7415576 Vimu2g01119 2 7413230 7415576 ECH
Vimu4g00872 4 7029808 7032381 Vimu2g01119 2 7413230 7415576 ECH
Vimu5g01633 5 27915601 27919099 Vimu2g01119 2 7413230 7415576 ECH
Vimu2g01119 2 7413230 7415576 Vimu5g00387 5 3586552 3588211 ECH