Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01117 ATGGACTGGACTCGAGGCCACATGCTCGGCCGTGGTTCTACCGCGGCCGTCTACATCGCCGAGTCCCGCCGATCCGGTCGAGTCTTTGCTGTCAAGTCGGCAGAGCTACACCGGTCGGAATTCCTCCAAAGGGAGGAGATGATTCTTTCCACTCTCAACTGTCCTCATATTGTTGCGTACCAAGGTTTTGACACAACGTTTGAGAACGGTGTTTACTGGTTCAACATGTTCATGGAATACGCGCCTCACGGGACGCTGGCGGAGCGCGGTGGTGGCATGGACGAAGCAGTGGTGGGATCCTATACCCGCCAAATTCTGCAGGGGCTGCACTACCTCCACTCCAGTGGGATAGTGCATTGCGACGTGAAGGGGCAGAATGTGTTGGTGACGGAGAAGGGGGTGAAAATTGCGGACTTGGGCTGTGCTCGGAGGGTGGGGGAGGTGTCGGTCATCGCCGGCACGCCGGCGTTCATGTCTCCTGAGGTAGCGCGTGGGGAGCAGCAGGGGTTCCCTGCTGACGTGTGGGCTCTGGGGTGCACAGTGCTGGAGATGATCACCGGGAAGCCACCGTGGCACGGCGGCGGCGACCCGGCGGGAGTGGTTTACAGGATCGGATTCTCCGATGAGTTGCCTGAGATTCCTAGCTGTGTGTCAGAGCAGGGGAGGGACTTTTTGGGAAAGTGTTTGAAGAGGGACCCGAATGAGAGGTGGTCGGTGGAGGAGCTTCTTGGACACGGTTTTGTTAAGGAATGCACGGAATTGAAGTTGCTTTTGTTGGATTCAGACACTCCCACTGGTGTGTTGGAACGAGGATTTTGGGATTCCTTGGAGACAACCGAGCATGGAGCACGTGATTGTCCCTCTCCCACGGACAGAATTCGTAGTTTGTTTTCGGATGAACCCCTTTGGGTATGGAAAAACGATGATGATAATGATGATGAGCAATGGGTGACGGTGAGGAGCAATGAATTCCATGAAGAATTATCCTTTCACAAAACAGACACTAGTTTTAATATGGTTAGTGATGAGGAAACCGGATTGGTTACTTTATGTGAACCTAAAATTGTAGTAGAATTGAGTAGATGGAATGCTATCAGTTGTGATGATTGTTATCTTAGAGGCAGAAACTGTGATTGTCGCTGCAGAGAATCATTATTGTCAACACGAGCATCCTATCTAGAATTGTTACAACAAGAAGGCTTGTTATCTGTAATTCATTCAAAATATTGGCACTTCATTGATAGTCATAGGCTCCTCCGATGGTGA 1266 0.5126 MDWTRGHMLGRGSTAAVYIAESRRSGRVFAVKSAELHRSEFLQREEMILSTLNCPHIVAYQGFDTTFENGVYWFNMFMEYAPHGTLAERGGGMDEAVVGSYTRQILQGLHYLHSSGIVHCDVKGQNVLVTEKGVKIADLGCARRVGEVSVIAGTPAFMSPEVARGEQQGFPADVWALGCTVLEMITGKPPWHGGGDPAGVVYRIGFSDELPEIPSCVSEQGRDFLGKCLKRDPNERWSVEELLGHGFVKECTELKLLLLDSDTPTGVLERGFWDSLETTEHGARDCPSPTDRIRSLFSDEPLWVWKNDDDNDDEQWVTVRSNEFHEELSFHKTDTSFNMVSDEETGLVTLCEPKIVVELSRWNAISCDDCYLRGRNCDCRCRESLLSTRASYLELLQQEGLLSVIHSKYWHFIDSHRLLRW 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01117 421 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 3 332 - -
Vimu2g01117 421 CDD STKc_MAPKKK 2 248 - -
Vimu2g01117 421 ProSitePatterns Serine/Threonine protein kinases active-site signature. 117 129 IPR008271 GO:0004672|GO:0006468
Vimu2g01117 421 Pfam Protein kinase domain 5 247 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g01117 421 ProSitePatterns Protein kinases ATP-binding region signature. 9 32 IPR017441 GO:0005524
Vimu2g01117 421 ProSiteProfiles Protein kinase domain profile. 3 248 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g01117 421 SMART serkin_6 3 248 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g01117 421 SUPERFAMILY Protein kinase-like (PK-like) 2 276 IPR011009 -
Vimu2g01117 421 Gene3D Transferase(Phosphotransferase) domain 1 2 276 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01117 Vimu-Chr2 7388189 7389821 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g01117 1 276 MAP Kinase Kinase Kinase AT2G32510 54.138 1.11e-106 318
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Vimu2g01117 Pkinase 2.7e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01117 K20716 - gmx:100802174 627.091
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00874 4 7052490 7053677 Vimu2g01117 2 7388189 7389821 ECH
Vimu5g01632 5 27872704 27873771 Vimu2g01117 2 7388189 7389821 ECH
Vimu2g01117 2 7388189 7389821 Vimu2g01117 2 7388189 7389821 ECH
Vimu2g01117 2 7388189 7389821 Vimu7g02037 7 18263122 18264339 ECH