Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01103 ATGAAGCCTGAAGGGTCTTTTTTGGTATGGCACTACTTGGTATTATTTGAGTTTGATATGTTAATTACCGATTCTTGGTTGTGTTGCAGATCATTTGCTTCCACATTGAAGATGGCTGAGGCTACACAGTCTAATGCTGAGTTGTTGGAGTGGCCAAAGAAAGATAAGCGCCGCTTCCTGCATGCTGTGTACCGTGTTGGTGATCTTGATCGCACCATTAAGTTTTACACTGAATGTTTTGGGATGAAGCTTTTGAGGAAAAGAGATGTTCCAGAAGAGAAATTTGCCAATGCTTTTCTTGGATATGGCCCCGAACAATCCCATTTTGTTGTGGAATTGACTTATAATTATGGGGTGACCTCATATGATATTGGAACTGGCTTTGGGCATTTTGGTATTTCAACTCCAGATGTTTACAAATTGGTTGAAAACATCCGGGCCAAGGGTGGAAATATCACTAGGGAGCCTGCTCCTGTTACGGGTGGGACATCTGTTATTGCCTTTGTGAAGGACCCTGACGGTTATATTTTTGAGCTCATCCAAAGACCTTCAACCCCTGAGCCATTGTGCCAAGTAATGCTTCGTGTTGGTGATTTAGAGCGCTCAATAAAATTTTATGAAAAGGTGTGTTTGGTGTTTTTTATGGCACTCATTTGGATGCTTTCTCAACCCAATCCATTTATGTTGGTTGTTGAGGCTTTAGGTTTGAGGGTCGTAAAGAGGGCTGATAGACCTCAACAAAAGTATACTATAGTCATGCTTGGGTACGCAGACGAGCAAGAGACAACTGTGTTGGAGCTTACGTATAACTATGGTGTTACTGAATACACCAAGGGAAATGCTTATGCACAGGTTGCTATAAGTACGGACGACGTATACAAGAGTGCTGAGGTTGTGAACATAGTCACACAAGAGCTTGGAGGAAAGATTACTCGGCAACCAGGGCCAATTCCTGGACTTAACACAAAGATCACTTCTTTCTTAGACCCTGATGGATGGAAAACTGTGAGTATTTTATTTTTGATATAG 1029 0.4189 MKPEGSFLVWHYLVLFEFDMLITDSWLCCRSFASTLKMAEATQSNAELLEWPKKDKRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKFANAFLGYGPEQSHFVVELTYNYGVTSYDIGTGFGHFGISTPDVYKLVENIRAKGGNITREPAPVTGGTSVIAFVKDPDGYIFELIQRPSTPEPLCQVMLRVGDLERSIKFYEKVCLVFFMALIWMLSQPNPFMLVVEALGLRVVKRADRPQQKYTIVMLGYADEQETTVLELTYNYGVTEYTKGNAYAQVAISTDDVYKSAEVVNIVTQELGGKITRQPGPIPGLNTKITSFLDPDGWKTVSILFLI 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01103 342 Gene3D - 185 338 IPR029068 -
Vimu2g01103 342 Gene3D - 31 183 IPR029068 -
Vimu2g01103 342 ProSiteProfiles Vicinal oxygen chelate (VOC) domain profile. 188 340 IPR037523 -
Vimu2g01103 342 CDD GlxI_Ni 60 180 - -
Vimu2g01103 342 SUPERFAMILY Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 189 334 IPR029068 -
Vimu2g01103 342 NCBIfam lactoylglutathione lyase 59 183 IPR004361 GO:0004462|GO:0046872
Vimu2g01103 342 PANTHER LACTOYLGLUTATHIONE LYASE 39 210 - -
Vimu2g01103 342 SUPERFAMILY Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 57 209 IPR029068 -
Vimu2g01103 342 Pfam Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 60 179 IPR004360 -
Vimu2g01103 342 ProSiteProfiles Vicinal oxygen chelate (VOC) domain profile. 58 182 IPR037523 -
Vimu2g01103 342 ProSitePatterns Glyoxalase I signature 2. 125 137 IPR018146 GO:0004462|GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01103 Vimu-Chr2 7306836 7309263 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g01103 191 333 Calmodulin-binding Proteins AT1G08110 26.190 3.87e-07 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01103 K01759 - gmx:100799447 513.842
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g01103 2 7306836 7309263 Vimu2g01103 2 7306836 7309263 ECH
Vimu2g01103 2 7306836 7309263 Vimu7g02050 7 18320740 18322858 ECH
Vimu7g02050 7 18320740 18322858 Vimu2g01103 2 7306836 7309263 PCT