Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01085 ATGATGCAGCAGCCAGGACTCGGCATGGCTCCTCCCACCATGGGGCAGCAGCCACCGCAACAGTATCAGCAGCAGCCGCCGCCGCAGCAGCAACCCTACGTCATGATGCCGCCGCAGCCCCAGGCGCCTCCGCCCATGTGGGCCCCCTCGTCCCAGCCTTCGTCGCAGCAGCAGCCAGCCAGCGTTGACGAGGTCCGGACCCTGTGGATCGGCGATTTGCAGTACTGGATGGATGAAAACTATCTCTACACCTGCTTTGCACCTACCGGCGAGGTTACATCTGTCAAAGTGATTCGAAATAAGCAAACTAGTCAATCAGAAGGTTACGGGTTTATTGAATTTAATAGTCGTGCTTCAGCCGAGAGAATCCTTCAAACATATAATGGGGCTATTATGCCAAATGGGGGGCAGAGTTTCAGGTTGAATTGGGCAAGTTTTAGTGCTGGTGAAAGGCGCCATGATGATTCTCCAGATCACACAATATTTGTTGGCGACTTGGCTGCAGATGTTACTGATTACTTGCTCCAAGAGACATTTAGGGCTCGTTACAATTCGGTGAAGGGTGCAAAAGTTGTTATTGATAGGCTAACTGGTCGGACCAAGGGGTATGGCTTTGTTAGGTTTGCGGATGAGAGTGAACAAGTGAGGGCAATGACTGAGATGCAGGGGGTTCTTTGCTCAACGAGACCCATGAGAATTGGGCCAGCCAGTAACAAAACCCCTGCTACTCAGCCGAAAGCATCATATCAGAATTCTCAAGGTCAAGGCACACAGAGCGAGAATGATCCTAATAATACAACTATTTTTGTGGGCAATTTGGACGCCAATGTTAGCGATGATCATTTGAGACAAGTTTTTAGCCAGTATGGAGAATTAGTTCATGTGAAGATTCCAGCAGGCAAGCGATGTGGTTTTGTCCAATTCTCTGACAGGAACTGTGCTGAAGAGGCACTTCGGATGCTAAATGGGACACTATTGGGTGGACAAAATGTTCGTCTGTCATGGGGACGCAGTCCTTCAAACAAACAGGCTCAGGCAGATCCAAACCAGTGGAATGGTGGTGGTGGATACTATGGGTATGCACAAGGTTATGAAAACTATGGTTATGCTCCTGCTGGTCAGGATCCTAACGTGTATGGCAGTTATCCGGGGTATCCTGGTTACCAACCTCCTCAGCAACAGCAGCAAATAGGATACAGTTGA 1203 0.4946 MMQQPGLGMAPPTMGQQPPQQYQQQPPPQQQPYVMMPPQPQAPPPMWAPSSQPSSQQQPASVDEVRTLWIGDLQYWMDENYLYTCFAPTGEVTSVKVIRNKQTSQSEGYGFIEFNSRASAERILQTYNGAIMPNGGQSFRLNWASFSAGERRHDDSPDHTIFVGDLAADVTDYLLQETFRARYNSVKGAKVVIDRLTGRTKGYGFVRFADESEQVRAMTEMQGVLCSTRPMRIGPASNKTPATQPKASYQNSQGQGTQSENDPNNTTIFVGNLDANVSDDHLRQVFSQYGELVHVKIPAGKRCGFVQFSDRNCAEEALRMLNGTLLGGQNVRLSWGRSPSNKQAQADPNQWNGGGGYYGYAQGYENYGYAPAGQDPNVYGSYPGYPGYQPPQQQQQIGYS 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01085 400 SUPERFAMILY RNA-binding domain, RBD 29 146 IPR035979 GO:0003676
Vimu2g01085 400 FunFam Polyadenylate-binding protein RBP45C 151 242 - -
Vimu2g01085 400 FunFam Polyadenylate-binding protein RBP45C 243 371 - -
Vimu2g01085 400 MobiDBLite consensus disorder prediction 233 271 - -
Vimu2g01085 400 Gene3D - 150 244 IPR012677 -
Vimu2g01085 400 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 266 338 IPR000504 GO:0003723
Vimu2g01085 400 MobiDBLite consensus disorder prediction 230 271 - -
Vimu2g01085 400 SUPERFAMILY RNA-binding domain, RBD 144 255 IPR035979 GO:0003676
Vimu2g01085 400 SMART rrm1_1 67 142 IPR000504 GO:0003723
Vimu2g01085 400 SMART rrm1_1 160 234 IPR000504 GO:0003723
Vimu2g01085 400 SMART rrm1_1 267 334 IPR000504 GO:0003723
Vimu2g01085 400 Gene3D - 10 149 IPR012677 -
Vimu2g01085 400 Gene3D - 245 347 IPR012677 -
Vimu2g01085 400 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 66 146 IPR000504 GO:0003723
Vimu2g01085 400 FunFam Polyadenylate-binding protein RBP45 11 150 - -
Vimu2g01085 400 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 68 133 IPR000504 GO:0003723
Vimu2g01085 400 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 161 224 IPR000504 GO:0003723
Vimu2g01085 400 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 268 331 IPR000504 GO:0003723
Vimu2g01085 400 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 57 342 - -
Vimu2g01085 400 MobiDBLite consensus disorder prediction 380 400 - -
Vimu2g01085 400 SUPERFAMILY RNA-binding domain, RBD 254 363 IPR035979 GO:0003676
Vimu2g01085 400 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 159 238 IPR000504 GO:0003723
Vimu2g01085 400 MobiDBLite consensus disorder prediction 21 50 - -
Vimu2g01085 400 CDD RRM1_SECp43_like 67 147 - -
Vimu2g01085 400 CDD RRM2_SECp43_like 158 237 - -
Vimu2g01085 400 MobiDBLite consensus disorder prediction 1 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01085 Vimu-Chr2 7142390 7146032 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g01085 65 345 Eukaryotic Initiation Factors Gene Family AT2G23350 27.622 6.71e-29 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01085 - - gmx:100801562 610.142
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g01085 2 7142390 7146032 Vimu2g01085 2 7142390 7146032 ECH
Vimu7g02077 7 18461436 18465448 Vimu2g01085 2 7142390 7146032 PCT