Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01079 ATGAGTTGCTTCCCATGCTGCAAAACAGACACCAAACCAGCCTCTAAAGGGGCAGTCTCCGGCAAAGTTTCCAAAGGAAGAAGAACATTCAAATCAGTAGCTGCGGCTATGTCTCTCAAAACAGGCAGCAGCAGGAACAGACAAATAGACGCAGAGATAAGAAAATTTGGACGTGTAAAAAATGACGTCAAAGTATTCACATATGCACAGCTTCTTGAAGCAACAAACAACTTCAGTTCTGATTGCCTGATCGGTGAAGGTGGATTCGGGAATGTTTACAAAGGATACATGAAAAGTGTTGAACAAACTGTAGCTGTGAAGGTACTGAACAGGGACGGAGCACAAGGAACTCGAGAATTTTTTGCAGAAATTTTGATGTTAAGTATGGTTCAACACCCAAACCTTGTGAGGCTCATCGGCTATTGTGCAGATGACCATTATAGGATTTTGGTTTATGAATTCCTGGGCAATGGGAGTTTGGAAAATCACCTTCTAGACTTAGGTGAAGGTAAGGAGCCTTTAGATTGGAAGACCAGAATGAAAATAGCAGAGGGAGCAGCTAAAGGACTTGAATATTTGCATAACAGTGAAGATATACCTATCATATACCGTGATTTCAAATCATCTAATATACTGTTAGATGATAACTTTAATGCAAAGCTCTCTGATTTTGGGCTGGCTAAGATTGGTCCTAAAGAAGGGCAGGAGCAAGTGACAAGCAGGGTGATGGGAACTTTTGGTTATTGTGCACCAGAGTATGCTGCTAGAGGTCAACTCAGCACAAAGTCGGATATTTATAGTTTTGGGGTTGTGTTTTTGGAAATAATATCTGGTAGGAGAGTATTTGACACTTCAAGAGCTACAGAAGAGCAAAACTTGATTGATTGGGCACAACCTTTGTTTAAGGACAGAACGAAGTTTACTCTAATGGCTGATCCTTTGCTTAAAGGTCAGTTCCCCGTGAAGGGTCTATTTCAAGCCCTTGCAGTGGCAGCAATGTGTTTACAAGAGGAACCTGAAACACGACCTTACATGGACGATGTTGTGACGGCTCTTGCACATTTAGCAGTGCACAAAGTTGGAGACCAAGACATAGCCGGAGACTCTATAAAATGTGCAGGCCATGTTGAATCTTTCAGAGTTTTAAGTTCTGCTGGATCCGAAAGGACGTAG 1173 0.4203 MSCFPCCKTDTKPASKGAVSGKVSKGRRTFKSVAAAMSLKTGSSRNRQIDAEIRKFGRVKNDVKVFTYAQLLEATNNFSSDCLIGEGGFGNVYKGYMKSVEQTVAVKVLNRDGAQGTREFFAEILMLSMVQHPNLVRLIGYCADDHYRILVYEFLGNGSLENHLLDLGEGKEPLDWKTRMKIAEGAAKGLEYLHNSEDIPIIYRDFKSSNILLDDNFNAKLSDFGLAKIGPKEGQEQVTSRVMGTFGYCAPEYAARGQLSTKSDIYSFGVVFLEIISGRRVFDTSRATEEQNLIDWAQPLFKDRTKFTLMADPLLKGQFPVKGLFQALAVAAMCLQEEPETRPYMDDVVTALAHLAVHKVGDQDIAGDSIKCAGHVESFRVLSSAGSERT 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01079 390 ProSitePatterns Protein kinases ATP-binding region signature. 84 107 IPR017441 GO:0005524
Vimu2g01079 390 Pfam Protein kinase domain 82 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g01079 390 Gene3D Transferase(Phosphotransferase) domain 1 155 370 - -
Vimu2g01079 390 FunFam Serine/threonine-protein kinase PBS1 155 369 - -
Vimu2g01079 390 ProSitePatterns Serine/Threonine protein kinases active-site signature. 201 213 IPR008271 GO:0004672|GO:0006468
Vimu2g01079 390 Gene3D Phosphorylase Kinase; domain 1 21 154 - -
Vimu2g01079 390 SUPERFAMILY Protein kinase-like (PK-like) 62 350 IPR011009 -
Vimu2g01079 390 ProSiteProfiles Protein kinase domain profile. 78 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g01079 390 CDD STKc_IRAK 84 352 - -
Vimu2g01079 390 PANTHER OS07G0668900 PROTEIN 3 361 - -
Vimu2g01079 390 FunFam Serine/threonine-protein kinase CDL1-like 49 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01079 Vimu-Chr2 7101765 7105049 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g01079 1 361 Glycoside Hydrolase AT3G07070 52.547 2.79e-134 389
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Vimu2g01079 Pkinase 8.8e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01079 - - gmx:100305361 667.537