Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01073 ATGGAAAACTTCACCTCTTCTTCTTCTCTGTCACCCATTCCATCCATTTCAGCTCCATCTTCTTCTGCACCTTTCGACGACTCTTTCGAAGACTCCTGCAGTATATGCCTAGAGTCTTTCACCATTCACGAACCATCCACTGTTACTAGTTGCAAACATGAATATCATCTGCATTGCATTCTTGAGTGGTCACAAAGAAGCCAAGAATGCCCAATTTGTTGGCAATCCCTTGCTTTGAAAGACCCTGCCAGCCAAGAGCTTCTAGCTGCAGTTGAAGATGAAAAACGCTTGAGATCAAGAAAGGCTACTGCTTTTCGTACCCGCCTTGAACAGTATGCCTATGAGGATGACTTGTTCTCAGACGACTCTGATTCTGATGACCAGATTATGAGGCGCCTAGTTGCTGCTGCAAATAGAGTCCGTCGTGTTCATAGACAGGAAAGGAATAGATCACCTGGTGCTGGTCCATCAGATGTTCTTGATATTAACTCTTCCATACATGTATCTGAGTTGCAAACAACACTAACAAATTCACCATCTGCGGGTAGTTTGCCTGCCTCGGCAGTAACATCTACACTTAATAATCAACCTCCGTTATCAAACACTACACCCGAAAGTGCAAGCCGACCAAACACTAATGAGATGTTTTCCTTCTCAGAATCCTTCAAATCCAAATTTTCTGCTGCTTCAACCAGATATAAGGAATCAATTTCAAAAGGTACACGGGGCCTCAAAGAGAAGTTACTTGCCCATAATGTCTCAGTAAAAGAGCTGAGTAAAGGTGTTCAGCGTGAGATGAATGCAGGCATTGCTGGAGTTGCACGGATGATTGAACGCCTTGATCTTTCAAAACGGTCCAATTCTCCTATCATTCCAATCCATAGTGAGGGAACTTCAGACTTCCCAAAGGAAGGGAAGAAGTATGTTGGAGAGAATGGCATTGGCGGTTCTCCAAGTAAAGAGAGTGAAGGTGCAGTTCATGATGTTAGTTCAGATGTCCCATTTGTCACTGGCGTGCAATCTTTTGGTCCAGGTTAA 1038 0.4383 MENFTSSSSLSPIPSISAPSSSAPFDDSFEDSCSICLESFTIHEPSTVTSCKHEYHLHCILEWSQRSQECPICWQSLALKDPASQELLAAVEDEKRLRSRKATAFRTRLEQYAYEDDLFSDDSDSDDQIMRRLVAAANRVRRVHRQERNRSPGAGPSDVLDINSSIHVSELQTTLTNSPSAGSLPASAVTSTLNNQPPLSNTTPESASRPNTNEMFSFSESFKSKFSAASTRYKESISKGTRGLKEKLLAHNVSVKELSKGVQREMNAGIAGVARMIERLDLSKRSNSPIIPIHSEGTSDFPKEGKKYVGENGIGGSPSKESEGAVHDVSSDVPFVTGVQSFGPG 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01073 345 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 21 88 IPR013083 -
Vimu2g01073 345 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 22 82 - -
Vimu2g01073 345 MobiDBLite consensus disorder prediction 162 213 - -
Vimu2g01073 345 MobiDBLite consensus disorder prediction 291 330 - -
Vimu2g01073 345 SUPERFAMILY RING/U-box 30 80 - -
Vimu2g01073 345 SMART ring_2 33 73 IPR001841 -
Vimu2g01073 345 Pfam Ring finger domain 31 73 IPR001841 -
Vimu2g01073 345 ProSiteProfiles Zinc finger RING-type profile. 33 73 IPR001841 -
Vimu2g01073 345 MobiDBLite consensus disorder prediction 142 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01073 Vimu-Chr2 7011635 7013790 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g01073 27 81 C3H Transcription Factor Family AT4G00335 45.455 4.78e-13 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01073 K19043 - gmx:100805449 427.557
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g01073 2 7011635 7013790 Vimu2g01073 2 7011635 7013790 ECH