Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01064 ATGGATGAAAAGAAGCATGATCAAGCAGCAAAAGAAGGACGCGGCAAGAGCAAAGTTCAATCTGACCCCAAGGTGGATCCTCCTACTGGTGCCTCTGCCTCTTCATCCAACCCACAGCCACCAAAAGAACCACTGGAGGAGCAACTCAGCCAGTTCTGGGCAAAACAGCGCCAGGAAGTTGAGGAGATCAGTGAGTCCAGGAATCACTGCTTGCCATTGGCTAGGATCAAGAGGATAATGAAGTCTGATGAGGATGTGAGAATGGTATCAGCTGAGGCTCCTGTGCTGTTGGCCAAGGCTTGTGAGATGTTCATCATGGAGCTCACAATGAGGGCATGGGCTAATGTTGAGGAGAACAAGAGGAGGACACTTAGTAAGAATGACATTGCAGCAGCAATGTCAAAGACAGACATGTATGATTTTCTTGTTGATATTGTTCCCAGGGAAGAGACAAGGGGTCCTCAAGTGTTTGCAGGTATACCAGGAACACCCATTCCTCCGACTCTGTCTCAGATTCTTCCTAACTGTCCTGTGCCACCTCATAATCAACATGATGCTGCAGGTCAACAGTCTGGTGCTCCAACAATGCTCATGGGAATGCCCCTTCTTGATCCAACTGATCCTCAGCAGCTGCAAGCCCAGCCTTCTCCAACTCCAATGTTGCCCATCCCCGAAGAAGAGAACAACCCTTCTCCTGATTCAGATGACTGA 711 0.4909 MDEKKHDQAAKEGRGKSKVQSDPKVDPPTGASASSSNPQPPKEPLEEQLSQFWAKQRQEVEEISESRNHCLPLARIKRIMKSDEDVRMVSAEAPVLLAKACEMFIMELTMRAWANVEENKRRTLSKNDIAAAMSKTDMYDFLVDIVPREETRGPQVFAGIPGTPIPPTLSQILPNCPVPPHNQHDAAGQQSGAPTMLMGMPLLDPTDPQQLQAQPSPTPMLPIPEEENNPSPDSDD 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01064 236 MobiDBLite consensus disorder prediction 1 21 - -
Vimu2g01064 236 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 41 190 - -
Vimu2g01064 236 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 71 133 IPR003958 -
Vimu2g01064 236 SUPERFAMILY Histone-fold 46 142 IPR009072 GO:0046982
Vimu2g01064 236 MobiDBLite consensus disorder prediction 179 236 - -
Vimu2g01064 236 MobiDBLite consensus disorder prediction 1 50 - -
Vimu2g01064 236 FunFam Nuclear transcription factor Y subunit gamma 35 148 - -
Vimu2g01064 236 MobiDBLite consensus disorder prediction 27 44 - -
Vimu2g01064 236 Gene3D Histone, subunit A 35 148 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01064 Vimu-Chr2 6959367 6960077 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g01064 52 205 CCAAT-HAP5 Transcription Factor Family AT3G48590 55.844 1.38e-55 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Vimu2g01064 CBFD_NFYB_HMF 4.2e-20 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01064 K08066 - var:108342662 268.47