Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01063 ATGGATCAAAACCAGCAAGGTGAAGCAGGAAAAAGAATTGGTGCAGATGAAGGCAAGAAACAGACAGCTGATGTTGTTCCTGTAGCTTCACCGTATGCTGGAGGGTATCGCTATGATCGGCAATGCATATACCAGCGGAAGCAAGAACAGTTGCAGCAACGGGTAAAAACCTTCTGGGAAAGACAGATGAAGGAAATCAAAGAGAGCAGTGATTTGAAGAGTCACAGCTTGCCTCTGTCGAGGATTAAGAAGATCATGAAGTTTGATGAGGATGTGAAGATGGTATCAAGTGAGGCTACTATGCTGTTAGGCAAGGCCTGTGAACTGTTCATAATGGAGCTCACAATGAGGTCTTGGGCTCACGTAGAGGATGACAAAAGGAAGATAATTAAGAAGACTGATGTTGCATCTGCAATCTCAATGAATGATATGTTTGATTTTCTTGTTGATGTTGTTCCCAGGGATGACACAGTCCCAGTCATGGCGGGACAGCAAGTGCTTCCACCGCCAAATCAGAATGCTCCTTACCCTTATATGTCACTTCCACCACCACCACCACCACCACCACCGTATGCTGCTCCGACAACCGCTCCTGGGAATGCTTCTTCTTCATCCGCTGCAAATCCATCCTATTTCAACTTCAATCCCACCCCAGATGAACAAGACCCTTCCAATTTCAATGATCATTAA 690 0.4551 MDQNQQGEAGKRIGADEGKKQTADVVPVASPYAGGYRYDRQCIYQRKQEQLQQRVKTFWERQMKEIKESSDLKSHSLPLSRIKKIMKFDEDVKMVSSEATMLLGKACELFIMELTMRSWAHVEDDKRKIIKKTDVASAISMNDMFDFLVDVVPRDDTVPVMAGQQVLPPPNQNAPYPYMSLPPPPPPPPPYAAPTTAPGNASSSSAANPSYFNFNPTPDEQDPSNFNDH 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01063 229 MobiDBLite consensus disorder prediction 170 195 - -
Vimu2g01063 229 MobiDBLite consensus disorder prediction 1 26 - -
Vimu2g01063 229 MobiDBLite consensus disorder prediction 162 229 - -
Vimu2g01063 229 FunFam Nuclear transcription factor Y subunit gamma 43 154 - -
Vimu2g01063 229 MobiDBLite consensus disorder prediction 196 222 - -
Vimu2g01063 229 Gene3D Histone, subunit A 39 154 IPR009072 GO:0046982
Vimu2g01063 229 SUPERFAMILY Histone-fold 24 148 IPR009072 GO:0046982
Vimu2g01063 229 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 39 191 - -
Vimu2g01063 229 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 76 139 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01063 Vimu-Chr2 6948331 6949020 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g01063 57 225 CCAAT-HAP5 Transcription Factor Family AT1G54830 46.286 2.62e-48 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Vimu2g01063 CBFD_NFYB_HMF 3.5e-16 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01063 K08066 - csav:115722631 162.54