Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01062 ATGGAGAAAAACCAGCATGGTCAACCAGGAAGAGGAATTGGTTCTGCTCCTGCACAAGAAGCACATAACAAGAACCAATATCAGTCCAAACCTACCAATCCTCCTATTCAGACTGTTGGTCCTTCTATTGCTTCATCCTACCCAGGAGAGCATCACTATGCTCTCCGATACCAGCAACAACAGGATCAGTTGGAGGAAAAAGTCAAGAGCTTTTGGGCACAACAACTGAAGGAAATTGAGGAGAGCACTAATTTGAGGAATCAACAGCGTGTGCCTCTGTCGAGGGTTAAGAAGATCATGAAGAGTGATGCAGATGTGAAGTTGGTTTCAGCTGAAGCTCCTGTGGTGTTTGCCAAGGCCTGTGAACTGTTCATAATGGAGCTCACAATGAAAGCTTGGGCTAACGCCGAGGACAACAATAGGAGTTCAATCAACAAGTCTGACATTGCATTTGCAATTGCAAGGACTGATGTGTTTGATTTTCTCGAGGATATTGCTCCCATTCCTAGGAATCACAAAAACACAATGATGCATCCATTGCTTCCAGGCAATGCTCCAACACCAACTCAGAATGTTCCTTATATGCCACCTCCTCAACATGCTGCTGCTAAAATTCCTCACGCGCTGCAAACCCATCCTCTCGCTCCAAGTTCAACTGTCCCCCCCAATCAGCAAAACCCTTCTCCTACTTCAGATGATTGA 702 0.4558 MEKNQHGQPGRGIGSAPAQEAHNKNQYQSKPTNPPIQTVGPSIASSYPGEHHYALRYQQQQDQLEEKVKSFWAQQLKEIEESTNLRNQQRVPLSRVKKIMKSDADVKLVSAEAPVVFAKACELFIMELTMKAWANAEDNNRSSINKSDIAFAIARTDVFDFLEDIAPIPRNHKNTMMHPLLPGNAPTPTQNVPYMPPPQHAAAKIPHALQTHPLAPSSTVPPNQQNPSPTSDD 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01062 233 MobiDBLite consensus disorder prediction 19 44 - -
Vimu2g01062 233 MobiDBLite consensus disorder prediction 212 233 - -
Vimu2g01062 233 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 44 170 - -
Vimu2g01062 233 MobiDBLite consensus disorder prediction 198 233 - -
Vimu2g01062 233 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 90 153 IPR003958 -
Vimu2g01062 233 Gene3D Histone, subunit A 51 168 IPR009072 GO:0046982
Vimu2g01062 233 FunFam Nuclear transcription factor Y subunit C 56 168 - -
Vimu2g01062 233 MobiDBLite consensus disorder prediction 1 51 - -
Vimu2g01062 233 SUPERFAMILY Histone-fold 22 162 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01062 Vimu-Chr2 6943306 6944007 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g01062 68 194 CCAAT-HAP5 Transcription Factor Family AT1G56170 51.181 3.94e-42 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Vimu2g01062 CBFD_NFYB_HMF 1.9e-15 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01062 K08066 - gmx:100807580 199.519
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g01062 2 6943306 6944007 Vimu2g01062 2 6943306 6944007 ECH