Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01052 ATGCTACCTGCAGATGGAGATCAAGCATCTATAATAGGGGGTGTCATAGAATTCATCAAGGAGTTACACCAAGTTCTTCAGGCTTTGGAGTCCCAGAAAAGAAGAAAGAGTTTAAGCCCTAGCCCTGGTCCGAGTCCACGAACACTTCAGCCAAATTTTCATCAACTTGATAGCTCCTCCATAGTTGGGCCCAATTCTTTCAAGGAACTGGGAGCAACCTGCAACTCTTCTGTTGCCGATGTTGAAGTGAAAATCTGTGGTTCAAATGTGATCTTGAAAGTCATCTCCCAAAGAATTCCGGGTCAAGTTGCAAGGATCATAACTGTTTTGGAAAGTCTTTCCTTTGAAGTTCTTCATCTGAACATCAGCAGCATGGAGGAGACTGTCCTTTACCAGTTTGTGGTCAAGGTGAAACAATAA 420 0.4333 MLPADGDQASIIGGVIEFIKELHQVLQALESQKRRKSLSPSPGPSPRTLQPNFHQLDSSSIVGPNSFKELGATCNSSVADVEVKICGSNVILKVISQRIPGQVARIITVLESLSFEVLHLNISSMEETVLYQFVVKVKQ 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01052 139 MobiDBLite consensus disorder prediction 33 54 - -
Vimu2g01052 139 PANTHER TRANSCRIPTION FACTOR FAMA 6 138 IPR044283 GO:0003700|GO:0010052
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01052 Vimu-Chr2 6825640 6831231 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g01052 6 137 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G06120 58.042 7.03e-49 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01052 - - gmx:100810771 233.802
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g01052 2 6825640 6831231 Vimu2g01052 2 6825640 6831231 ECH