Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01050 ATGGGTATCTCATGGAGTAGCAGAAGAAGAAACAATTACATCCAAAACACACCGCCTCCACTCCCACCTCCCCCTTACTATTACCGTCCCCAATTCAACCACCCTCCTCCTCCGCTGCCACCGCAGGGCTACTTTCTCCCTTCCACAACCACTTACTCCCCCCACAACAACAACAACAACAACTATGCTGCTCCCCCTCCCTTGGCTCCACCGCCACAGACGGCACAGCCGCCACCGCCGCCGCAGACCCATTCCATCTCCTTCTATCACCCCAACCAGAGTCCCTATACCAACTACGCCAATTCCGCGCCCAATCGCCTTCACTACCAACCTTCATACCACCCTCAGCCTACCGTGTGGCCGGCCGCTACTCGCGCCGCTGCCTCCACTCCTCCGCCCTATGTCGATCACCAGACTGCGAAGAAGATACGAAACTATGTTAACGTCCACAAAGACACCCTGCGCCTCGAGGTTGACCAGGAAAACCCCGATCATCATCTCATTTCCTTCGTTTTCGATGCTGTCTACGATGGCAGATCTTTTTATTTAAAATTCATGTATGAGTTGAAATTGCACGATAACTTCAGGAGGATACCGATTGAATACCTACTACAGTGGATTGGCGATCTTGTGGTCTTGCAGTGTCCGGTGCCGGATGTCTCACTATCCTTGAGAAACCCCGCAAAGTACCTTTTGTTTGACCAGGCCTCACAAATTGCGGCCAACATTACTGTCTCCTACTTTGCCAAAGAAGAAGAAAAATGTAGGTTTGTTCCATTATTTCCTGATGCTTTTCAGCCAGTCACAATACCCTTTCAGAAAGGAGTCGGCCAGACATTTTCCCAGCCTTCGGGAACAGGAATTGACCTAGGCTTCTTTGAGTTGGATGATCTTTCAAAGTCCTCACCTGGAGAAGACGTCTTTCCTCTAGTAATATGTGCCGAAACAAGTTTGAAAACACCCTCGGAAGATGAAACTCCGGGTGATTCTGTTTTAGATGCATCACCTCACATGCAAATAACTCAAGGTGTCTTGGAGAAAAGTAATGGTGCTGGTTCTTTCCATATAAAAGTAGTAAGGCAGATTTTGTGGATTGATGGTGTTAGATATGAGTTGAGAGAGTTATATGGAATAGCAACAAGCTCACCTGCAGCTGATTTTGACGACAATGATCCCGGGAAGGAGTGTGTCATATGCATCACTGAACCAAAGGATACAGCTGTCTTACCTTGTCGACATATGTGTATGTGCGGTGACTGTGCAAAAGATTTGCGACTTCGATCCAATAAATGCCCTATATGCCGGCAGTCTATCGAGGAACTTATACAGATCAAAGTAAACAATGACAATCAATGA 1356 0.4764 MGISWSSRRRNNYIQNTPPPLPPPPYYYRPQFNHPPPPLPPQGYFLPSTTTYSPHNNNNNNYAAPPPLAPPPQTAQPPPPPQTHSISFYHPNQSPYTNYANSAPNRLHYQPSYHPQPTVWPAATRAAASTPPPYVDHQTAKKIRNYVNVHKDTLRLEVDQENPDHHLISFVFDAVYDGRSFYLKFMYELKLHDNFRRIPIEYLLQWIGDLVVLQCPVPDVSLSLRNPAKYLLFDQASQIAANITVSYFAKEEEKCRFVPLFPDAFQPVTIPFQKGVGQTFSQPSGTGIDLGFFELDDLSKSSPGEDVFPLVICAETSLKTPSEDETPGDSVLDASPHMQITQGVLEKSNGAGSFHIKVVRQILWIDGVRYELRELYGIATSSPAADFDDNDPGKECVICITEPKDTAVLPCRHMCMCGDCAKDLRLRSNKCPICRQSIEELIQIKVNNDNQ 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01050 451 MobiDBLite consensus disorder prediction 16 44 - -
Vimu2g01050 451 MobiDBLite consensus disorder prediction 1 15 - -
Vimu2g01050 451 ProSiteProfiles Zinc finger RING-type profile. 396 435 IPR001841 -
Vimu2g01050 451 MobiDBLite consensus disorder prediction 1 113 - -
Vimu2g01050 451 MobiDBLite consensus disorder prediction 45 63 - -
Vimu2g01050 451 SUPERFAMILY RING/U-box 389 441 - -
Vimu2g01050 451 Pfam Zinc finger, C3HC4 type (RING finger) 394 440 - -
Vimu2g01050 451 MobiDBLite consensus disorder prediction 86 112 - -
Vimu2g01050 451 CDD mRING-HC-C3HC5_MGRN1-like 394 435 IPR045195 -
Vimu2g01050 451 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 380 445 IPR013083 -
Vimu2g01050 451 MobiDBLite consensus disorder prediction 64 85 - -
Vimu2g01050 451 FunFam probable E3 ubiquitin-protein ligase LOG2 380 445 - -
Vimu2g01050 451 PANTHER MAHOGUNIN 52 447 IPR045194 GO:0061630
Vimu2g01050 451 SMART ring_2 396 434 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01050 Vimu-Chr2 6778284 6781349 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g01050 134 451 C3H Transcription Factor Family AT3G06140 46.541 7.56e-87 268
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01050 - - gsj:114373285 482.641