Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01049 ATGGGTATCTCATGGAGTGGCAGAAGAAGAAACAATTACATCCAAAATCCACCGCCTCCATTCCCACCTCCCCCTTACTATTACCATCCCCAATCCAGCCACCCTCCCCCTCCGCAGCCACCGCAGGGCTACTTCCTCCCTTCCACAACCGCTTATGCCCCGCACTGCAACAACTATGCCGCTCCTCCTCCCTTCACTCCACTGCCACAGCCGCCGCCGCCCTATTACCCCAACCAGAGTGCCTATCCCAACTACGCCAATTCCGTCCCCAGTCACCTTCACTACCAACTTTTCTACCACCCTCAACCTAGCGCGTGGCCAGGCGCAACTCGCTCCTCTGCCTCCACTCCTCCGCCCTATGTCGATCACCAGGCTGCGAAGAAGATAAGAAATTATGTGAACGTCCACAAAGACACCCTGCGCCTCGAGGTTGACCAGGAAAACCCCGACCATCATCTCATTTCCTTCGTATTCGACGCTGTCTACGATGGCAGCATTACTATCTTCTACTTTGCCAAAGAAGAAGAAAAATGTAGGTTTGTTCCATTGTTTCCTGATGCATTTCAGCCAGTCAGCATACCCTTTCAGAAAGGAGTTGGTCAGACATTTTCCCAGCCTTCGGGAACAGGAATTGATCTAGGCTTCTTTGAGTTGGATGATCTTTCAAAGCCCTCACCTGGAGAAGATGTCTTTCCTCTTGTAATATGTGCTGAAACAAGTTTGAAAACACCCTCAGAAGATCAAACTCCGGGTGATTCCGTGCTAGATGCATCGCCTCACATGCAAATAACTCAGGGTGTCTTAGAGAAAAGTAATGGTGCGGACCTTTTCCTGATAAATGTAGTAAGGCAGGTTTTGTGGATTGATGGTGTTCGATATGAGTTGAGAGAATTATATGGAATAGCAAGCTCGTCCGCAGCCGATTTTGAGGACAATGATCCTGGGAAGGAGTGTGTCATATGCCTGACTGAACCAAAGGATACAGCTGTCTTACCTTGTCGACATATGGTAAGATTTTATTTCATATGTGCTGATATGTGGAGTAGATAA 1050 0.4867 MGISWSGRRRNNYIQNPPPPFPPPPYYYHPQSSHPPPPQPPQGYFLPSTTAYAPHCNNYAAPPPFTPLPQPPPPYYPNQSAYPNYANSVPSHLHYQLFYHPQPSAWPGATRSSASTPPPYVDHQAAKKIRNYVNVHKDTLRLEVDQENPDHHLISFVFDAVYDGSITIFYFAKEEEKCRFVPLFPDAFQPVSIPFQKGVGQTFSQPSGTGIDLGFFELDDLSKPSPGEDVFPLVICAETSLKTPSEDQTPGDSVLDASPHMQITQGVLEKSNGADLFLINVVRQVLWIDGVRYELRELYGIASSSAADFEDNDPGKECVICLTEPKDTAVLPCRHMVRFYFICADMWSR 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01049 349 MobiDBLite consensus disorder prediction 1 47 - -
Vimu2g01049 349 SUPERFAMILY RING/U-box 310 348 - -
Vimu2g01049 349 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 302 349 IPR013083 -
Vimu2g01049 349 MobiDBLite consensus disorder prediction 15 44 - -
Vimu2g01049 349 PANTHER MAHOGUNIN 45 336 IPR045194 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01049 Vimu-Chr2 6773034 6774742 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g01049 27 345 C3H Transcription Factor Family AT3G06140 44.745 1.49e-72 228
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01049 - - vra:106775674 541.576
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g01049 2 6773034 6774742 Vimu2g01049 2 6773034 6774742 ECH