Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01040 ATGAAGATCTCAATATCAGCCTGTGCCTGCAAACAAGAGCTGCCCCTAGTAAGTTTCCAAAAGGGGCTAACGATGGAGTCGTTGTTTCATCATCGGAGTAAGGACAAGGTGATAATCATAATGGGGGCCACGGGTACCGGCAAGACGAAGTTGGCCGTAGACGTGGCAAAACACTTCCAACCAGCGGAGATAGTGAACTCCGACAAAATGCAAGTGTACAAGGGCCTCGACATCACCACGAACAAGGTCACTGAAGAAGAGTGTCGAGGGGTCCCACATCACCTGCTTGGCACTGTTGACCCTAATATAAATTTCACCGCCAGCGACTTCTGTCGCCACGCCACATCCACAATTGATTCCATTGTGGAAAGAAATGGCTTACCCATCATTGCCGGAGGCTCCAATTCTTACTTGGACGCACTCGTGAATCACCACGCGGAGTTTCGGTTAAGGTATAAGTGTTGTTTCCTCTGGGTTGACGTCTCTCTCCCCGTGCTCCATTCCTCTCTTCAGGCACGTGTGGACCGCATGATCGACGCCGGTCAAGTCAACGAGGTTCGGGAATTCTTCGATCCTCGCGCCGATTACACCAGAGGGATCCGAAGGGCCATTGGGGTGCCCGAATTCGATGACTTCCTACGCGCTGAAGCTTCTGGAACCGAGGACGAGACAACCAGAAAGAGACTTCTGGAGGCTGCCATTGCCAGGATCAAGATCAACAACTGCACGCTCGCCAACCGCCAGATTCAAAAGATTCACCGCCTCCACGGGTTGTGGAAACGGAACATGCACCGCCTCGACGCCACAGAGGTTTTCCTCGGCTCTCGCGACGCCTGGCACGACCACGTGCTCGCCAAGAGCTTGGTCATCCTTCACAAGTTCCTTTTCGAGGAAAAGAAAACGCTCGTCCCCGCCGGAATCGTGTCCCCGAAAGACGTAATTGCAGCTGTTTCTGCGCCGTCGGTAGCAATGGCAGCAACCCATTAG 987 0.5339 MKISISACACKQELPLVSFQKGLTMESLFHHRSKDKVIIIMGATGTGKTKLAVDVAKHFQPAEIVNSDKMQVYKGLDITTNKVTEEECRGVPHHLLGTVDPNINFTASDFCRHATSTIDSIVERNGLPIIAGGSNSYLDALVNHHAEFRLRYKCCFLWVDVSLPVLHSSLQARVDRMIDAGQVNEVREFFDPRADYTRGIRRAIGVPEFDDFLRAEASGTEDETTRKRLLEAAIARIKINNCTLANRQIQKIHRLHGLWKRNMHRLDATEVFLGSRDAWHDHVLAKSLVILHKFLFEEKKTLVPAGIVSPKDVIAAVSAPSVAMAATH 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01040 328 Gene3D Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 163 263 - -
Vimu2g01040 328 Pfam IPP transferase 71 145 - -
Vimu2g01040 328 Pfam IPP transferase 149 250 - -
Vimu2g01040 328 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 34 294 IPR039657 -
Vimu2g01040 328 FunFam Adenylate isopentenyltransferase 5, chloroplastic 163 263 - -
Vimu2g01040 328 Gene3D - 34 295 IPR027417 -
Vimu2g01040 328 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 34 223 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01040 Vimu-Chr2 6722788 6723774 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g01040 151 301 C2H2 Transcription Factor Family AT2G27760 33.898 4.26e-22 94.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01040 K10760 - gmx:100812928 566.229
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g01040 2 6722788 6723774 Vimu2g01040 2 6722788 6723774 ECH
Vimu7g01913 7 17347082 17348539 Vimu2g01040 2 6722788 6723774 PCT