Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01029 ATGGTGAGGGTCAGTGTCTTGAATGATGCTCTCAAGAGCATGTACAATGCTGAGAAGAGGGGGAAGCGACAGGTCATGATTAGGCCATCCTCCAAAGTGATTATAAAATTCCTCTTGGTGATGCAAAAGCATGGGTACATTGGAGAGTTTGAGTATGTTGACGATCACAGAGCTGGGAAAATTGTCGTTGAATTGAATGGTAGATTGAACAAATGTGGGGTTATTAGTCCCCGTTTTGATGTGGGTGTCAAAGAGATTGAGGGTTGGACCGCTAGGTTGCTCCCCTCAAGACAGTTTGGGTATATCGTGTTGACTACCTCTGCTGGCATCATGGACCATGAAGAAGCTAGGAGGAAGAATGTTGGTGGGAAAGTGCTTGGTTTCTTTTACTAG 393 0.4504 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01029 130 Gene3D - 70 130 - -
Vimu2g01029 130 Hamap 30S ribosomal protein S8 [rpsH]. 2 130 IPR000630 GO:0003735|GO:0005840|GO:0006412
Vimu2g01029 130 PANTHER 40S RIBOSOMAL PROTEIN S15A 1 129 IPR000630 GO:0003735|GO:0005840|GO:0006412
Vimu2g01029 130 Coils Coil 130 130 - -
Vimu2g01029 130 FunFam 40S ribosomal protein S15a 70 130 - -
Vimu2g01029 130 Gene3D - 1 69 - -
Vimu2g01029 130 Pfam Ribosomal protein S8 7 130 IPR000630 GO:0003735|GO:0005840|GO:0006412
Vimu2g01029 130 FunFam 40S ribosomal protein S15a 1 69 - -
Vimu2g01029 130 ProSitePatterns Ribosomal protein S8 signature. 100 117 IPR000630 GO:0003735|GO:0005840|GO:0006412
Vimu2g01029 130 SUPERFAMILY Ribosomal protein S8 4 130 IPR035987 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01029 Vimu-Chr2 6628396 6629519 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g01029 1 130 Cytoplasmic Ribosomal Protein Gene Family AT5G59850 97.692 1.74e-93 264
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01029 K02957 - qsu:111991195 261.536
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g01899 7 17256101 17257193 Vimu2g01029 2 6628396 6629519 PCT