Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01027 ATGACGTTAGTGTCATCCGTGGATGTGGACTTCTTTACAGAATATGGCGAGGGCAGCAGATACAGAATAGAGGAAGTAATTGGTAAAGGAAGCTATGGTGTTGTCTGCTCTGCATATGATACACACACTGGAGAAAAGGTTGCAATAAAGAAAATCAATGACATATTTGAGCATGTTTCTGATGCTACTCGCATTCTTCGTGAGATTAAGCTTCTTAGACTTTTACGCCATCCAGATATTGATTATGCTCTAGCGGATCCATACTTTAAAGGCTTGGCCAAGGTTGAGAGAGAACCATCTGCTCAGCCTGTTACCAAGATGGAATTTGAGTTTGAGAGACGCCGGATAACCAAGGAAGATGTCCGTGAGCTTATATACAAAGAGATTCTGGAGTACCATCCAAAGATGTTGAAGGAATTTCTAGAGGGAGCAGAACCAACAGGTTTCATGTATCCAAGGCCATGTGTGTTGTATTCAGACAATAAAATACATAATACGTCGGACGTTGCAGATGATTTGTCCAAATGTTCCATCAAAGAAGTTGAGAAACAACCAGTAGATAGGAGTAATGTTATCCCTATGTCCCGGCTTCCTTTACCAGCACCTCAAAATATTCAAGGTGTAATGATTGAGTTTTACATGCATTTTATCCCTTCTCTGTTTCCTTTACTTCCTATTTATTGGACACACAGACATTACTGGTTTTATCTGACAAGAGTGTTGTGCCTTCATGATGCTTGTTTCATTTCAAGTCATCTTTCTTTTAACCAATAA 774 0.3966 MTLVSSVDVDFFTEYGEGSRYRIEEVIGKGSYGVVCSAYDTHTGEKVAIKKINDIFEHVSDATRILREIKLLRLLRHPDIDYALADPYFKGLAKVEREPSAQPVTKMEFEFERRRITKEDVRELIYKEILEYHPKMLKEFLEGAEPTGFMYPRPCVLYSDNKIHNTSDVADDLSKCSIKEVEKQPVDRSNVIPMSRLPLPAPQNIQGVMIEFYMHFIPSLFPLLPIYWTHRHYWFYLTRVLCLHDACFISSHLSFNQ 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01027 257 Gene3D Phosphorylase Kinase; domain 1 7 82 - -
Vimu2g01027 257 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 20 86 - -
Vimu2g01027 257 SUPERFAMILY Protein kinase-like (PK-like) 18 80 IPR011009 -
Vimu2g01027 257 ProSitePatterns Protein kinases ATP-binding region signature. 27 51 IPR017441 GO:0005524
Vimu2g01027 257 Gene3D Transferase(Phosphotransferase) domain 1 83 112 - -
Vimu2g01027 257 ProSiteProfiles Protein kinase domain profile. 21 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g01027 257 SMART serkin_6 21 192 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g01027 257 Pfam Protein kinase domain 21 80 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g01027 257 Gene3D Phosphorylase Kinase; domain 1 113 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01027 Vimu-Chr2 6611416 6625126 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g01027 5 80 MAP Kinase Gene Family AT5G19010 98.684 1.37e-44 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Vimu2g01027 Pkinase 1.9e-10 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01027 - - zju:107423242 207.223