Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01025 ATGGCTTCTGTTGCTATCAGAAACCTATATTCTAAGCGTCTTCTTTCCTCTTTGCATTTCACAAATGCTTTTCATTCATTCTCTTGTGGCACCATATCCCAAAACTACCATGCATCTACATTGGATCTTGTTTCTTTACGAAGATCCATGGCCACCTTCACTCGATCAAAGCCCCATCTTAACGTTGGCACAATAGGGCATGTTGATCATGGGAAAACTACACTAACTGCTGCAATAACCAAGGTGCTAGCTGAAGAAGGTAAAGCCAAGGCCGTTGCCTTCGAGGAAATAGACAAGGCTCCCGAGGAGAAGAAGAGAGGAATTACTATTGCTACTGCTCATGTAGAATATGAGACAGCAAAGAGGCACTATGCCCATGTTGATTGCCCAGGACACGCAGATTATGTTAAGAACATGATAACTGGAGCTGCACAAATGGATGGTGGAATTCTTGTGGTTTCTGCACCAGATGGGCCAATGCCTCAAACAAAAGAACATATACTGCTTGCTCGGCAGGTTGGTGTGCCAGCATTGGTCTGCTTTCTGAATAAAGTTGATGCTGTTGACGATCCAGAGTTGCTTGAACTTGTGGAACTGGAGCTTCGTGAACTTCTTAATTTCTACAAATTTCCTGGGGATGAAATTCCAATTGTGCGAGGTTCTGCCCTCTCTGCTCTACAGGGGACAAATGAAGAACTTGGAAAGAAGGCTATCTTAAAACTAATGGATGCTGTGGATGAATACATTTCTAATCCTGTAAGGAAACTTGACAAGCCTTTCTTAATGCCTATAGAAGACGTTTTCTCAATTCAGGGGCGAGGAACTGTTGTGACGGGTCGTGTTGAACAAGGCACCATCAAAGTGGGAGAGGAGGTTGAAGTATTGGGACTAACACAGAGTGGACCTTTGAAGACTACTGTAACTGGTGTGGAAATGTTCAAGAAAATTTTGGATCGAGGGGAAGCAGGTGATAATGTGGGACTTCTTCTTCGTGGTCTGAAGCGCGATGATGTTCAGCGAGGAATGGTCGTGACCAAGCCTGGTTCTTTGAAAACGTATAAGAAGTTTGAAGCCGAGATTTATGTGCTCTCGAAAGATGAAGGTGGCCGTCATACAGCTTTTTTCTCTAACTATAAGCCTCAGTTTTACCTGAGGACTGCAGACATTACTGGAAAGGTGGAATTACCAGAAAATGTTAAGATGGTTATGCCTGGTGATAATGTGGCTGCAACTTTTGAGCTGATGTCACCTGTTCCTCTTGAAACAGGACAAAGATTTGCTTTAAGAGAGGGAGGCAGAACAGTTGGTGCAGGAGTTGTCTCCAAAGTGATTTCCTAG 1338 0.438 MASVAIRNLYSKRLLSSLHFTNAFHSFSCGTISQNYHASTLDLVSLRRSMATFTRSKPHLNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFEEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPALVCFLNKVDAVDDPELLELVELELRELLNFYKFPGDEIPIVRGSALSALQGTNEELGKKAILKLMDAVDEYISNPVRKLDKPFLMPIEDVFSIQGRGTVVTGRVEQGTIKVGEEVEVLGLTQSGPLKTTVTGVEMFKKILDRGEAGDNVGLLLRGLKRDDVQRGMVVTKPGSLKTYKKFEAEIYVLSKDEGGRHTAFFSNYKPQFYLRTADITGKVELPENVKMVMPGDNVAATFELMSPVPLETGQRFALREGGRTVGAGVVSKVIS 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01025 445 FunFam Elongation factor Tu 48 252 - -
Vimu2g01025 445 Gene3D - 49 252 IPR027417 -
Vimu2g01025 445 Gene3D Translation factors 255 385 - -
Vimu2g01025 445 Gene3D Translation factors 389 444 - -
Vimu2g01025 445 FunFam Elongation factor Tu 255 385 - -
Vimu2g01025 445 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 56 275 IPR027417 -
Vimu2g01025 445 Pfam Elongation factor Tu C-terminal domain 350 443 IPR004160 -
Vimu2g01025 445 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 98 113 IPR031157 -
Vimu2g01025 445 NCBIfam elongation factor Tu 49 444 IPR004541 GO:0003746|GO:0005525|GO:0006414
Vimu2g01025 445 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 354 445 IPR009001 -
Vimu2g01025 445 Pfam Elongation factor Tu domain 2 274 345 IPR004161 GO:0005525
Vimu2g01025 445 CDD EF_Tu 58 252 IPR041709 -
Vimu2g01025 445 Hamap Elongation factor Tu [tuf]. 48 445 IPR004541 GO:0003746|GO:0005525|GO:0006414
Vimu2g01025 445 Pfam Elongation factor Tu GTP binding domain 57 250 IPR000795 GO:0003924|GO:0005525
Vimu2g01025 445 PRINTS GTP-binding elongation factor signature 178 187 IPR000795 GO:0003924|GO:0005525
Vimu2g01025 445 PRINTS GTP-binding elongation factor signature 141 152 IPR000795 GO:0003924|GO:0005525
Vimu2g01025 445 PRINTS GTP-binding elongation factor signature 105 113 IPR000795 GO:0003924|GO:0005525
Vimu2g01025 445 PRINTS GTP-binding elongation factor signature 125 135 IPR000795 GO:0003924|GO:0005525
Vimu2g01025 445 PRINTS GTP-binding elongation factor signature 61 74 IPR000795 GO:0003924|GO:0005525
Vimu2g01025 445 CDD EFTU_II 260 348 IPR033720 -
Vimu2g01025 445 SUPERFAMILY Translation proteins 254 350 IPR009000 -
Vimu2g01025 445 CDD EFTU_III 351 440 - -
Vimu2g01025 445 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 57 253 IPR000795 GO:0003924|GO:0005525
Vimu2g01025 445 PANTHER ELONGATION FACTOR TU-RELATED 51 444 - -
Vimu2g01025 445 NCBIfam small GTP-binding protein domain 61 198 IPR005225 GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01025 Vimu-Chr2 6602521 6605855 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g01025 55 443 Eukaryotic Initiation Factors Gene Family AT5G60390 30.575 6.69e-46 163
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01025 K02358 - gmx:102667962 794.653