Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01010 ATGTATGGAAGCTTAATCGGAGTTTTCATATTATTTGGTTTATTGGTGGGATTTTTCTTATGGCAATATTATAGAGTTTATCGGAATCGTAACTCATATCCTGAGATGAGAGCTTTTGAAGAGTCAGAAATTGAAGACATTGAGTCTCATCCATCAGATAATGATCAGATTTTGAGTGCAAGATTCAGGAATCAAAGAGAAGATATAATGTATCCTTCATTAGCTCCGAAAACAGAAATTGTTACTCTAGCCATGAAAGCCTTGCCTCCTGTTCTTCCCTTTGAAAGGGATCATCAAAGCGATTGTTCTATTTGCATGGAAGAGTTTAAAATTGGTGAGTTGGTTCAACCTTTTGGAGTGTGTTGTCATTACTTTCATATGTATTGTATAAACTCTTGGTTACGTCTTGGAAAAATTAATTGTCCAGTTTGTCGCAAGGAATTATCATTTGATAAGGAATTATCAATTCATACTTCCTCTGAAGATCTTAATTAA 495 0.3414 MYGSLIGVFILFGLLVGFFLWQYYRVYRNRNSYPEMRAFEESEIEDIESHPSDNDQILSARFRNQREDIMYPSLAPKTEIVTLAMKALPPVLPFERDHQSDCSICMEEFKIGELVQPFGVCCHYFHMYCINSWLRLGKINCPVCRKELSFDKELSIHTSSEDLN 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01010 164 Pfam Ring finger domain 101 145 IPR001841 -
Vimu2g01010 164 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 73 150 IPR013083 -
Vimu2g01010 164 ProSiteProfiles Zinc finger RING-type profile. 102 145 IPR001841 -
Vimu2g01010 164 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 10 149 IPR044675 -
Vimu2g01010 164 SMART ring_2 102 144 IPR001841 -
Vimu2g01010 164 SUPERFAMILY RING/U-box 84 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01010 Vimu-Chr2 6385686 6386180 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g01010 25 148 C3H Transcription Factor Family AT5G66070 29.600 7.96e-11 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01010 - K16281 aprc:113865236 114.775