Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01009 ATGATTGTAAAGGATCATTTTGTTGGTACTGAGCTTGCAATGACTAATGCTATTGTGGAGGAGGAAATAGACTTTTCTTGTGATCCGTACATAGGGTTGGAATTTGACACAGCAGATGAAGCACTAAAGTTCTACACTTCATATGCAAATAGAACAGGATTTAAAGTTCGGATTGGTCAGCTGTATAGATCAAGAACTGATGGGTCAGTTTCTTCTCGAAGATTTGTGTGCTCAAAGGAGGGACGTCAACTCAGTTCAAGAACAGGCTGTCCAGCATTCATAAGGGTGCAAATAAATGGTTCTGGAAAGTGGGTGATTGATCATTTTCATAAGGAACATAATCACAATCTTGAAATCAGTGGTGAAAACTGTACTCCAACATTGCAACAGAAAGGTGATACAGTTGTGAACTCTCTTACTGAGTTTACTAGGAGGCCAAGGAAGAAATTGCTGGAAGAAGCCGATAATGATTCCTCTTGTCCCTTTGGCATTATTGATTTCAAGCGTCTGAGAAAGGAAGAGCTTGAAGTACAGCCCAAGACTGAACCGTATGTTGGTCAAGAGTTCAGTTCACCTAATGAAGCCTACCAATTTTATCATGCATATGCAGCGCATTTGGGTTTTGGAGTTCGAATTGGTCAATTGTTTCGTTCCAAGAATGATGGATTGATTACATCCCGCCGATTTGTTTGCTCCAAGGAGGGGTTCCAGCATCCTTCAAGAGTTGGTTGTGGGGCTTATTTAAGGATTAAGAGACAGCCGACAGGAAAGTGGACAGTGGACCGTCTCCGAAAGGATCATAACCATGATCTGGACACTGAAAAAGAGGGCAGGGCAAAAGATATCCATTCTTCTAATATTCTGAATGACGATGCAGATACTGGATTTGTGAACGGTGACTTGTTTAGAATCGATAACTACCCTGTCCCTAGAGGAGGTAGGCAAAATCACATTAGAAGTGAGTGGTACAACATTCTTTTAGAATATTTTCAAACAAGACAGACAGAAGATACTGGATTCTTTTATGCCGTGGAAGTTGACAATGGTAATTGTATGAGCATATTTTGGGCGGATGGCAGATCTAGATATTCATGTAGTCAGTTTGGTGACGTCCTAGCCTTGGACACTTCATACCGAAAAACTGTCTATTTGGTGCCTTTTGCTACTTTTGTTGGGGTCAATCATCACAAGCAACCTGTGCTTCTTGGATGTGCTTTAGTTGCCGATGAATCTGAAGAATCTTTCACTTGGTTGTTTCAGACATGGCTTAGGGCAATGTCTGGCCGGCAGCCTCTGACAGTTATTGCTGATCAAGATATTGCAGTCCAGAGGGCAATAGCAAAAGTCTTTCCTGTAACCTATCATCGGTTTTCTTTGTGGCAAATTAAGGCAAAGGAACAAGAGAACATGGGTCTGATGGGTGATGGCTTTACAAAAGACTATGAAAAGTGTGTTTACCAGAGTCAGACAGTTGATGAATTTGACGCCACATGGAACGTGCTACTCAACAAATATGGATTGAAGGACAATGCTTGGCTAAAAGAGATGTATGAGAAGCGGGCATCTTGGGTTCCGTTGTATTTAAAGGGCACATTTTTTGCTGGTATTCCCATGAATGAAAGCCTTGATTCATTCTTTGGTGCACTTTTAAATGCCCAGACACCTCTCTTGGAGTTCATTCCCCGGTACGAAAGGGGTCTTGAGCGACGCCGCGAGGAAGAAAGAAAAGAGGATTTTAATACTTCTAATTTTCAACCCATTTTGCAAACAAAAGAACCAGTGGAAGAACAATGCAGAAGGCTTTACACTCTTGCTGTATTCAAAGTATTTCAAAAAGAGCTATTGCAGTGCTTTAGCTATCTCGGGTTTAAAATATTTGAGGAAGGGGGTCTGAGCAGATATATGGTACGAAGGTGTGGAAATGATATGGAGAAACATGTAGTTACATTTAATGCATCAAATCTCAGCATTAGTTGTAGCTGTCAGATGTTTGAGCGTGATGGTGTTCTTTGTAGACACGTGTTGAGGGTTTTCCAGATATTACAATTAAGAGAAGTTCCTTCTCGCTACATCTTACACCGGTGGACAAGAAATGCTGAGGATGGTGTCTTTCCTGACATAGAATCGTGGAGCAGCTCTCAGGAACTTAAAAATTTGATGCTATGGAGTCTAAGAGAAACTGCATCTAAATACATCGATGCTGGTGCAACATCCATTGAAAAGTATAAACTTGCCTATGAAATTTTGCGAGAGGGTGGGAGAAAGCTTTGTTGGCACAGGTGA 2283 0.4135 MIVKDHFVGTELAMTNAIVEEEIDFSCDPYIGLEFDTADEALKFYTSYANRTGFKVRIGQLYRSRTDGSVSSRRFVCSKEGRQLSSRTGCPAFIRVQINGSGKWVIDHFHKEHNHNLEISGENCTPTLQQKGDTVVNSLTEFTRRPRKKLLEEADNDSSCPFGIIDFKRLRKEELEVQPKTEPYVGQEFSSPNEAYQFYHAYAAHLGFGVRIGQLFRSKNDGLITSRRFVCSKEGFQHPSRVGCGAYLRIKRQPTGKWTVDRLRKDHNHDLDTEKEGRAKDIHSSNILNDDADTGFVNGDLFRIDNYPVPRGGRQNHIRSEWYNILLEYFQTRQTEDTGFFYAVEVDNGNCMSIFWADGRSRYSCSQFGDVLALDTSYRKTVYLVPFATFVGVNHHKQPVLLGCALVADESEESFTWLFQTWLRAMSGRQPLTVIADQDIAVQRAIAKVFPVTYHRFSLWQIKAKEQENMGLMGDGFTKDYEKCVYQSQTVDEFDATWNVLLNKYGLKDNAWLKEMYEKRASWVPLYLKGTFFAGIPMNESLDSFFGALLNAQTPLLEFIPRYERGLERRREEERKEDFNTSNFQPILQTKEPVEEQCRRLYTLAVFKVFQKELLQCFSYLGFKIFEEGGLSRYMVRRCGNDMEKHVVTFNASNLSISCSCQMFERDGVLCRHVLRVFQILQLREVPSRYILHRWTRNAEDGVFPDIESWSSSQELKNLMLWSLRETASKYIDAGATSIEKYKLAYEILREGGRKLCWHR 760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01009 760 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 17 124 IPR031052 GO:0006355
Vimu2g01009 760 Pfam FAR1 DNA-binding domain 43 117 IPR004330 -
Vimu2g01009 760 Pfam FAR1 DNA-binding domain 197 272 IPR004330 -
Vimu2g01009 760 ProSiteProfiles Zinc finger SWIM-type profile. 646 682 IPR007527 GO:0008270
Vimu2g01009 760 SMART 26again6 657 684 IPR006564 GO:0008270
Vimu2g01009 760 Pfam SWIM zinc finger 653 679 IPR007527 GO:0008270
Vimu2g01009 760 Pfam MULE transposase domain 371 464 IPR018289 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01009 Vimu-Chr2 6378955 6381237 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vimu2g01009 MULE 9.7e-24 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01009 - - vra:111242705 1538.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g01009 2 6378955 6381237 Vimu2g01009 2 6378955 6381237 ECH