Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00998 ATGGGGTGTGTCCATGGCAAGTGCTGTACTCGTTACCCTTCACCGTCAGTGGGTGGCTCCAGGGACTTCAGAGAACATGGCCCTTATGGTACCCAGAGGAAGCACATTCTCACTCAGAGTTCACTGCAATTTGTTCCCGTTCCTTCCCATAACTTCACTTTGGAATACTCTGTGCTCACTCAGAGAGGGTACTATCCTGATTCACCTGATAAAGAAAACCAGGATAGTTTCTGCATTAGGACACAGTTCCAAGGTAACCCAAGTGTCCATTTCTTCGGTGTTTATGACGGGCATGGCGAATTTGGTGCCCAGTGTTCGAACTTTGTTAAGGATAGGTTGGTGGAAAATTTGTCTAGTGACTTTGCATTGTTGGAGGACCCTGTCAAGGCTTACACTTCTGCTTTCTTGACCACGAATGAGGACTTGCATAAGAACGAGATTGACGATTCCTTGAGTGGCACCACTGCAATTACGGTGCTGGTCATTGGGGACACCCTTTATGTTGCTAATGTTGGTGATTCGAGAGCAGTGCTGGCTGTTAAGGATGGGAACCGGGTTGTTGCTGAGGACTTGTCCACTGATCAGACACCATTTAGGAGAGATGAGTATGAGAGAGTGAAGCTTTGTGGGGCAAGGGTTTTGAGTGTTGATCAGGTGGAGGGGCATAAGGATCCGGATATTCAGACTTGGGGTGATGAAGAGAGTCAGGGTGATGATCCTCCTAGGTTGTGGGTTCAGAATGGTATGGTGCCTGGAGCTGCATTTACAAGGAGTGTAGGGGATATGTTGGCTGAGACTATCGGTGTAATTGCTGTTCCTGAGGTGTCAACGGTTCAGCTTACACCTAACCATCTTTTCTTCGTTGTTGCAAGTGATGGGGTATTTGAATTCCTATCCAGCCAAACTGTTGTTGATATGGCAGCAAGTTATTCAGATCCCCGTGATGCATGTGCTGCCATTGCTGGAGAGTCATATAAACTATGGTTAGAACACGAGGGCCGAACTGATGATATAACAATTATTATCGTTCATATCAAAGGCCTGTCTAATTCAGGTACATCTGGACTTGGATCAGGAGAGGTCAATGTCAGCACTGTAACAAGGACCAAGAGCAAGAGGGTAAAGGGAGCATCTGAATTATCTGCTACAACTGGGTTAGATGTTTATCGTTCGGTCAGGAATGGCTTCTCTGATTTACAGTCCTGTCCACAGCATGTGGTCTCAACCAGAAGCCCAGCCATAGTGGTCCCTTCTCCAGCTTTGATTGGAGAGAGGCTTTATGGAAGCTTCAGTATGTATGCTTATACTTTCTCCTTGAAGGCTGCTGAAGGTTACTGGTTTGAGGTTCATTATCTTGGAAGCTGA 1365 0.4652 MGCVHGKCCTRYPSPSVGGSRDFREHGPYGTQRKHILTQSSLQFVPVPSHNFTLEYSVLTQRGYYPDSPDKENQDSFCIRTQFQGNPSVHFFGVYDGHGEFGAQCSNFVKDRLVENLSSDFALLEDPVKAYTSAFLTTNEDLHKNEIDDSLSGTTAITVLVIGDTLYVANVGDSRAVLAVKDGNRVVAEDLSTDQTPFRRDEYERVKLCGARVLSVDQVEGHKDPDIQTWGDEESQGDDPPRLWVQNGMVPGAAFTRSVGDMLAETIGVIAVPEVSTVQLTPNHLFFVVASDGVFEFLSSQTVVDMAASYSDPRDACAAIAGESYKLWLEHEGRTDDITIIIVHIKGLSNSGTSGLGSGEVNVSTVTRTKSKRVKGASELSATTGLDVYRSVRNGFSDLQSCPQHVVSTRSPAIVVPSPALIGERLYGSFSMYAYTFSLKAAEGYWFEVHYLGS 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00998 454 FunFam Phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein 50 347 - -
Vimu2g00998 454 SMART PP2C_4 51 343 IPR001932 -
Vimu2g00998 454 CDD PP2Cc 71 345 IPR001932 -
Vimu2g00998 454 ProSiteProfiles PPM-type phosphatase domain profile. 55 345 IPR001932 -
Vimu2g00998 454 SUPERFAMILY PP2C-like 44 347 IPR036457 -
Vimu2g00998 454 ProSitePatterns PPM-type phosphatase domain signature. 91 99 IPR000222 GO:0043169
Vimu2g00998 454 Pfam Protein phosphatase 2C 73 320 IPR001932 -
Vimu2g00998 454 PANTHER PROTEIN PHOSPHATASE 73 344 IPR015655 GO:0004722|GO:0006470
Vimu2g00998 454 Gene3D - 47 347 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g00998 Vimu-Chr2 6329002 6332180 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g00998 1 350 PP2C-type Phosphatase Gene Family AT3G06270 72.286 0.0 514
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g00998 - - aprc:113872580 811.216