Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00988 ATGAACGATGAACGAGAACCAACAGCTTCCTCGAGAGAATTTTATGTTGGCAGCAATGGCGTCCCCAAGACAGAAAGAAAACAAGTAGTTGAAAGGGATAAATCTATTTTTAGAGGCAGGCGTCCACGAACTGGGTTTTCTGATTCATTCTCAAGTATTGGACATTGTTCTTTAATTTGTGTACTAATGCTGAAAATGAATACCATATTAGAATTGGAAGCATTAGACAATGAAGAGGGAGGAGCACCTGAGCACTCTCCTAGGAGTCAAGGGTCTGAAACCCCAAGTTCAAGGACCAGCACTTCAGATTCGGAGGGTCAGGGGTCTTTAGTAGGCAATTCACCTAATGCTAATAATCAATGGCGTGGTTTCTTCAAGCTACTGAAGAAAGGATCCCAAATGCCTTTCCAAACTTTTCATCCACTTAAAAATGTTCCAAAACTCACAAGAAGAAAAAGCAAGAGAATCAGGGAGGACATGTGTCCATCTTTGAATTCTCCAGCTCTTCGCTCATCTTTTGACAGTGAGTTTGGCTACTTAAAATCTTCATGGAAAAACTTCACTCTCGCAGAGATCATGACTGCAACAAACGACTTTAGCGAAGCTAATTTGATTGGGGAGGGAGGCTATGCGGAGGTTTATTTAGGAAAATTGGAAGATGGAAACTTTGTTGCCATTAAACGGTTGACAAGAGGGAACCAAGAAGAAATGACCGCAGATTTCTTGTCTGAGCTTGGCATTATAGTACATGTGGATCATCCCAATATAGCTAGATTGATTGGATATGGTGTTGAAGGAGGAATGTTTCTCGTTCTTCAATTGTCTCCACATGGTAGCTTGTCATCTATACTTTATGGACCTAGAGAGAAGCTGAATTGGAGCCTCAGATATAAGATTATTTTGGGGACTGCTGAGGGACTCCGCTATCTGCATGAGGGTTGTCAAAGAAGGATCATTCACAAAGACATTAAGGCTTCTAATATTTTGCTCTCAGAGGATTTTGAGCCCCAGATATCTGATTTTGGGCTTGCAAAGTGGTTACCTGACCAATGGACTCATCATACTGTCTCCAAAGTGGAAGGCACATTCGGCTACCTTCCTCCTGAATTCTTCATGCATGGTATAGTAGATGAAAAAACAGATGTGTATGCTTATGGTGTGCTATTATTGGAGCTCATTACTGGTCGACAAGCTTTGGATAGCTCACAGAGAAGTCTGGTGATGTGGGCAAAACCTCTGCTATCTGCAAATAATATCAAAGCCCTAGTCGATCCAGTTTTGGCTGATGCTTACAATGAGGAGCAGATGGCACTTGTAACCTTAACAGCTTCTCTATGTGTAGACCAGTCTTCGATTCAGCGACCAGATATGAGTCAGGCATCTGATATAGAGCATGTGTTTTTTGGTGATTGGATGCAGGTGTTGGAGATACTAAGAGGGGAAGAAGATATCCTGAGAATCATGAAAGAACGGACCAAGGTAAAACTTCAGAGGACATACTCTGAAGAACTGTTTGATGCAGAAGAGTACAACTCAACCAAGTTTTTGAATGAGAGGGATCGACATATGGAGACTATTCTAGGATCAGCTACAGACGAATGA 1602 0.4182 MNDEREPTASSREFYVGSNGVPKTERKQVVERDKSIFRGRRPRTGFSDSFSSIGHCSLICVLMLKMNTILELEALDNEEGGAPEHSPRSQGSETPSSRTSTSDSEGQGSLVGNSPNANNQWRGFFKLLKKGSQMPFQTFHPLKNVPKLTRRKSKRIREDMCPSLNSPALRSSFDSEFGYLKSSWKNFTLAEIMTATNDFSEANLIGEGGYAEVYLGKLEDGNFVAIKRLTRGNQEEMTADFLSELGIIVHVDHPNIARLIGYGVEGGMFLVLQLSPHGSLSSILYGPREKLNWSLRYKIILGTAEGLRYLHEGCQRRIIHKDIKASNILLSEDFEPQISDFGLAKWLPDQWTHHTVSKVEGTFGYLPPEFFMHGIVDEKTDVYAYGVLLLELITGRQALDSSQRSLVMWAKPLLSANNIKALVDPVLADAYNEEQMALVTLTASLCVDQSSIQRPDMSQASDIEHVFFGDWMQVLEILRGEEDILRIMKERTKVKLQRTYSEELFDAEEYNSTKFLNERDRHMETILGSATDE 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00988 533 PANTHER OS08G0249100 PROTEIN 80 512 IPR046958 -
Vimu2g00988 533 MobiDBLite consensus disorder prediction 78 117 - -
Vimu2g00988 533 Gene3D Transferase(Phosphotransferase) domain 1 276 467 - -
Vimu2g00988 533 FunFam receptor-like cytosolic serine/threonine-protein kinase RBK2 276 492 - -
Vimu2g00988 533 MobiDBLite consensus disorder prediction 25 41 - -
Vimu2g00988 533 MobiDBLite consensus disorder prediction 87 117 - -
Vimu2g00988 533 SUPERFAMILY Protein kinase-like (PK-like) 180 461 IPR011009 -
Vimu2g00988 533 FunFam Receptor-like cytosolic serine/threonine-protein kinase RBK2 169 273 - -
Vimu2g00988 533 Pfam Protein kinase domain 200 407 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g00988 533 Gene3D Phosphorylase Kinase; domain 1 164 273 - -
Vimu2g00988 533 ProSitePatterns Serine/Threonine protein kinases active-site signature. 318 330 IPR008271 GO:0004672|GO:0006468
Vimu2g00988 533 MobiDBLite consensus disorder prediction 1 44 - -
Vimu2g00988 533 SMART serkin_6 199 468 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g00988 533 ProSitePatterns Protein kinases ATP-binding region signature. 205 227 IPR017441 GO:0005524
Vimu2g00988 533 ProSiteProfiles Protein kinase domain profile. 199 468 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g00988 Vimu-Chr2 6268790 6271614 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g00988 170 460 Receptor kinase-like Gene Family AT1G53420 40.468 6.85e-68 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Vimu2g00988 Pkinase 8.1e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g00988 - - gmx:102670300 829.32