Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00979 ATGGAACCCCAACAATCTCTCCCTCCCATGGACGATTCCGAAGACCCTTCCTCCACTTGGGACTTCTCCTACCTTCTAGACTTCAACCTCGAAGAAGACCACACCATTAATTCTCTCCCATTCTCTTCTCCCTTCAACGACGCTCCCGAGATCCCTAACGACCGGGTCCGAAAGCGTGATCCCCGACTCACTTGCTCCAACTTTCTCGCGGGTCGGGTCCCTTGCGCCTGCCCCGAACTTGACGCCAAACTCGAGGAGGAGGGTTTGCCTGGCAAGAAACGCGCGCGCACCGCTCGTGCCTCATCATCCGCTCGATGCCAGGTCCCGGGTTGTGAGGTCGATATCTCCGAACTCAAAGGTTATCACCGCCGACACAGAGTGTGCCTCCGCTGCGCCAATGCCACCACTGTTGTCCTCCACGGCGAGCCCAAGAGATACTGCCAGCAGTGCGGGAAGTTTCATGTTTTGTCGGATTTCGATGAAGGGAAACGAAGTTGCAGAAGGAAGTTAGAACGGCATAACACGCGAAGGCGGAGAAAGCCCCTGGTGGAATCCGGAGGTGGTGCTATCGCCGAACTTGAGGCCGTTACTCAGAATGAGGAAAACAATTATGATGCGGTAGCAGGAAAAGATTGTTCAAATTTGAGTAATGAGATCAACAACATAGTAGTGTTGCCAGATCATGGAGATGAACCTGTTCCCATTCTGATACCAGCTCCTGATGCCCAGAATGTTAATAGTGACAGTGTTGTGTCTTTGCCTGTTTCTGGTGAAACTCGAGTGAATAGTGGGAACACTTCTAATTCGCCTTCTTATTGTGACAATAAGAGTGCCTACACGTCTATGTGCCAAACAGGTCGGATTTCGTTTAAGCTTTATGATTGGAATCCAGCAGAATTTCCTAGAAGGCTACGACACCAAATATTCCAATGGTTGGCAAGTATGCCTGTGGAGTTGGAGGGTTATATCCGCCCTGGGTGCACCATTTTGACAAGTTTTATTGCAATGCCTAACATTATGTGGATAAATTTACGGAAAGACTCTTTGGAACATGTGAACAAACTTGTTGCCCCGGGAAAGATGCTATCTGGAAGAGGGACTGCACTAGTTCATCTGAATGACATAGTCTTCCGTGTTATGAAAGATGGAACCTCTGTGACGAAAGTCGAGGTCAACTTGCAGACACCTAGGCTTCATTATGTTCACCCTACATGCTTTGAGGCTGGCAAACCTATGGAGTTTGTTGCTTGTGGAAGTAACTTACTGCAGCCTAAATTCCAGCTTCTTGTATCGTTTTCGGGAAAGTATCTGAAATGTGAGTATTGTGTACCGGCCCCACATAACTGGACTGAAGAAAATATTTCTTGCGCTTTTGACAATCAGTTGTACAAGATATATGTCCCTCATACAGAGGAAAGTCTCTATGGGCCTGCATTTATTGAGGTGGAGAATGAATCCGGTTTGTCAAACTTTATTCCTGTACTCATTGCGGATAAAGAAACTTGTTCTGAAATGAAGATACTGCAGCAAAAATTAGATTCATCTCTCCTTTCTAATCAATTCCGGTCTGCATCAGGTGGTTCTATCTGCAGCTCGTGTGAAACATTTACACTTAGCCACACATCATCGGACTTACTTGTAGATGTAGCATGGTTGCTTAAGGACACCACTTCAGAAAATTTTGACAGAGTGATTACAGCTTCACAAATCCAAAGATATTGTCACTTGTTGGATTTTCTGATGTGCAATGAATCAACAGTCATGTTGGAAAAAATATTACCAAATTTGATAATCTTGACAGAAAGCATGAAATCCAATTTTGCGATTAATATGACTAGTGATGTTGATACAAGGCAACTCCTGAATCACATACATAATGCTCAAATTGCCATATTTCAGAAACATCAGAAAAATGGAAGTATTATTGTGCAGCCTGAAATGGAAGGCTTTAAACTTGCTCAGGGTTGCTCTCATGATAACAAGATCTCAGTTGCTATTAACAGTCAGGGTATCGTGTCAAGAGCAGATGCAAAGTGGGGAGTACTGAAAAATCTAACTTGTAGTGACAAAAATGAAAGAATACCTCTTTTAAAGAGAGATATTATAATGAATGTGGAAGAGTTGCCTGAAATATATGGTGGTGGATGTTTAGGCAGGGGGTTGTTGACCCCTCGACCAGCTATTTTTGTGATGGTTTCCATTGCTGTTTGTCTAGGGGTTTGTGTAGCCGTCCTTCATCCAGGAGGGGTTACTGAGTTAGCAGTATCCGTTAGAAGGTGTTTGTTTAACTATTAG 2295 0.4444 MEPQQSLPPMDDSEDPSSTWDFSYLLDFNLEEDHTINSLPFSSPFNDAPEIPNDRVRKRDPRLTCSNFLAGRVPCACPELDAKLEEEGLPGKKRARTARASSSARCQVPGCEVDISELKGYHRRHRVCLRCANATTVVLHGEPKRYCQQCGKFHVLSDFDEGKRSCRRKLERHNTRRRRKPLVESGGGAIAELEAVTQNEENNYDAVAGKDCSNLSNEINNIVVLPDHGDEPVPILIPAPDAQNVNSDSVVSLPVSGETRVNSGNTSNSPSYCDNKSAYTSMCQTGRISFKLYDWNPAEFPRRLRHQIFQWLASMPVELEGYIRPGCTILTSFIAMPNIMWINLRKDSLEHVNKLVAPGKMLSGRGTALVHLNDIVFRVMKDGTSVTKVEVNLQTPRLHYVHPTCFEAGKPMEFVACGSNLLQPKFQLLVSFSGKYLKCEYCVPAPHNWTEENISCAFDNQLYKIYVPHTEESLYGPAFIEVENESGLSNFIPVLIADKETCSEMKILQQKLDSSLLSNQFRSASGGSICSSCETFTLSHTSSDLLVDVAWLLKDTTSENFDRVITASQIQRYCHLLDFLMCNESTVMLEKILPNLIILTESMKSNFAINMTSDVDTRQLLNHIHNAQIAIFQKHQKNGSIIVQPEMEGFKLAQGCSHDNKISVAINSQGIVSRADAKWGVLKNLTCSDKNERIPLLKRDIIMNVEELPEIYGGGCLGRGLLTPRPAIFVMVSIAVCLGVCVAVLHPGGVTELAVSVRRCLFNY 764
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00979 764 ProSiteProfiles Zinc finger SBP-type profile. 103 180 IPR004333 GO:0003677
Vimu2g00979 764 Pfam SBP domain 106 180 IPR004333 GO:0003677
Vimu2g00979 764 SUPERFAMILY SBT domain 104 181 IPR036893 GO:0003677|GO:0005634
Vimu2g00979 764 Gene3D - 97 167 IPR036893 GO:0003677|GO:0005634
Vimu2g00979 764 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 86 582 IPR044817 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g00979 Vimu-Chr2 6217041 6228105 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g00979 8 758 SBP-box Gene Family AT5G18830 45.420 0.0 646
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Vimu2g00979 SBP 1.2e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g00979 - - gmx:100776034 1257.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g00979 2 6217041 6228105 Vimu2g00979 2 6217041 6228105 ECH