Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00974 ATGCAGGATGTCCCACTGCGAAACAAAGAAGTTTCAGATAGTGGACCCAATGGTAGGCGCCCTGATATTTCACTTCAAGTTCCTCCTAGACCTATAGGGTTTGGGAGCACTAGTGGTGGGAGGGTTTTGGACCATTCTCAAAGTTTCAGCAAAGGGATATCATCATCAAGAGGCTTCTTGCGGGCCTTGAGCTTCAAAAGAAAAGGAAATGTAGGGGATGGGGAAAGAAGCAGCCTACTTAGTTCAGACCCCAAGACAGCTGCAGATAGTTCTAATATGGCCTCCATATCTGAAATTGCATGGAAAAGATGCACTTCTCTTCCTGTTACACCAGCATCAAATCTGTCTCCTTCAGTTGCTACACCCATTTCTGCAAGGACATATAATGAACAAACTAAGCCACATAAAGACGTTGATCGTTCTAAGGTTTCAAGGTCCCTTTCTGTACCTGGACGAAATGTTGTTATTGTAAGATCTGTCTCTTTTTCTACCCGTGGTGAACAGGAGCAACAAGATCAAAATGAAGATCAAATAACTCCTGTGCCAGTAGAAGTTACTGCCGATGAAGAAATTCCTGAAGAGGAAGCAGTGTGCAGGATATGTTTCGATGTGTGTGATGAAAGAAATACCTTTAAAATGGAATGCAGTTGCAAAGGTGACCTGAGATTGGTGCATGAAGAATGTTTAATTAAATGGTTTAGCAACAAAAGCGACAAGAAATGTGATGTATGTAGGCAAGAGGTTCAGAATTTACCTGTAACTTTGCTTCGTGTGACAAGCTCTGTTCAACGACAAAACAGACAGATGCAAGGTCAGCAGAACCTACATCCGGAGTCAATAAGCGCATGGCAAGACTTTGTGGTGCTTGTCCTGATCAGCACAATATGCTACTTTTTCTTCCTTGAACAGCTACTGCTTCCTGAATTGAAGACTCAAGCTATTATTATTGCAGCACCATTTGCCTTTACCTTGGGCCTCCTAGCTTCTATTTTTGCAGTCATTCTGGCAATTAAGGAGTATATATGGACATATGCTGCTCTCGAGTTTGCCCTTGTAGCTTTAACTGTGCATCTATTTTATACAATGTTGCATTTGATGGCCATATATGCCATACTACTTTCAGCAGTTTTGGGTTTTGGAATTGCTATGGCCATCAACTACGCATATATCCAGTTTGTCACTTGGAGGCTTCAAGTCTCTTATGATGATAATCCAGTATGA 1221 0.4185 MQDVPLRNKEVSDSGPNGRRPDISLQVPPRPIGFGSTSGGRVLDHSQSFSKGISSSRGFLRALSFKRKGNVGDGERSSLLSSDPKTAADSSNMASISEIAWKRCTSLPVTPASNLSPSVATPISARTYNEQTKPHKDVDRSKVSRSLSVPGRNVVIVRSVSFSTRGEQEQQDQNEDQITPVPVEVTADEEIPEEEAVCRICFDVCDERNTFKMECSCKGDLRLVHEECLIKWFSNKSDKKCDVCRQEVQNLPVTLLRVTSSVQRQNRQMQGQQNLHPESISAWQDFVVLVLISTICYFFFLEQLLLPELKTQAIIIAAPFAFTLGLLASIFAVILAIKEYIWTYAALEFALVALTVHLFYTMLHLMAIYAILLSAVLGFGIAMAINYAYIQFVTWRLQVSYDDNPV 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00974 406 ProSiteProfiles Zinc finger RING-CH-type profile. 190 251 IPR011016 GO:0008270
Vimu2g00974 406 SMART ringv_2 197 245 IPR011016 GO:0008270
Vimu2g00974 406 MobiDBLite consensus disorder prediction 75 91 - -
Vimu2g00974 406 Pfam RING-variant domain 198 244 IPR011016 GO:0008270
Vimu2g00974 406 MobiDBLite consensus disorder prediction 1 54 - -
Vimu2g00974 406 PANTHER OS02G0165000 PROTEIN 45 402 - -
Vimu2g00974 406 ProSiteProfiles Zinc finger RING-type profile. 198 245 IPR001841 -
Vimu2g00974 406 MobiDBLite consensus disorder prediction 70 91 - -
Vimu2g00974 406 SUPERFAMILY RING/U-box 194 248 - -
Vimu2g00974 406 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 184 253 IPR013083 -
Vimu2g00974 406 MobiDBLite consensus disorder prediction 40 54 - -
Vimu2g00974 406 CDD RING_CH-C4HC3_MARCH 198 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g00974 Vimu-Chr2 6173565 6176323 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g00974 136 305 C3H Transcription Factor Family AT2G37950 26.630 1.44e-10 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g00974 - - vun:114188987 749.199
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g00974 2 6173565 6176323 Vimu2g00974 2 6173565 6176323 ECH