Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00968 ATGGAGTGCAATAAAGAAGAGGCCGTAAGGGCCAAAGAAATTGCTGAAAAAAAAATGCAAAACAAAGATTTCAGCGGGGCTCGAAAATTTGTTCTTAAGGCTCAGCAGCTATATCCTGATTTGGAGAATATTAATCAGATGCTTATTGTCTGTGATGTGCATTGCTTTGCTGATCAGAAATTGTTTGGCAATGAGATGGACTGGTATAAAATTCTTCAAATTGAGCTGACGGCTAATGATGCAACAATTAAGAAACAATACAAGAAGTTTGCTCTTCAACTTCATCCTGACAAAAACAAGTTTTCTGGTGCAGAAGCGGCATTTAAGCTGATTGGGGAAGCTCAAAGAGTTCTTTTAGATAGAGAAAAACGATCTAGGCTTGATATGAATCTGGGCAGGGCTCCAATGAACAGAGCTACCATGCCATCTCATCATCATCGGAATGTTCAGATGAATTTTAATCCTGTGATGCAAACCACTGTCAGACCCAGTTTTACAAACTTAAATCCTCATCAGCAACAACAGTCTGGACAGACATCTCATCAGGGGCCTAATCGTGGACGCCCTACTTTTTGGACCATGTGCTCACATTGTTCTGTTAGATATGAGTATTTTCTGGAAGTTTTACACAGATCTCTTCGCTGTCAACAGTGCAATAGGCCCTTCGTTGCATTTGATATACAAAGTACAGCACCAACAACTAATTCAACTCAGCAAGCTTTTGGTGCACAAAACCATAGCCAGAATCATGGCGCCTTCAATGTTGGTGTTGGATCTCAAGGTAATGTGCATACTCACAGATCTCACACCGATTCACACAAAAAAAAACGCCATACTGTGGATGACCCTGTAAAGCCAAATGGAAAGAGAAGGAGAAAGCGGGTAGCTGAATTCAGTGAAAGTTCTGAATCTGTGGGCAGTACTGATTCTGAATCTGAAGAGGAGATTCGTTTTGACAGTGATGCTGTTCCTGGTTTTTCTACTCACATAGAACAAAATCCACGTAGATCTACGCGACAAAAGCATCAGGTTTCCTACAAGGAAAATGCGAGTGATGATGAAGGGACTGGATCTCCATTTGGTGCTGGTGAAGAGGAGCATGAGGAGGCAGCTAAAATTAATGAACAAAATGGTTTGGCTGCTGATAAGAAAGATCAGCGACAGGTAAAGGGGAAGCAGAACTTTTATTCTGAAGAGAGCGTTCAAAATATAAAAGAGGAGCTCAAGGAGGTGAGGGAAAAAGAGGCAGTGGGTAGCTCAAACACAGACAAAACTTCAGAGCATTCACCCTTGAAATCAGCAGATCAACCAGTTCAGTTAATTTATCCAGATGCAGAGTTCAGTGACTTTGAAAAAGACAAGAAAGAGGAGTCTTTTGCTGCTGGGCAGATTTGGGCTATTTACGATACAGTTGATGGTATGCCTCGATTCTATGCTTTAATCAAAAAAGTTTTCTCTCCTGGATTCAAGTTGCGTATAACATGGTTTGAACCAGATGCAGAAGAGAAAGATGAAATCCACTGGATAAATGAGCAATTGCCAGTTGCTTGTGGGGAACATAGACTTGGTAATACAGAAATTACCGAAGATCGACTGATGTTCTCCCATCTTATTGTTTGTGAAAAGATTGGCCGCTGTAGGTATAAAGTATATCCTAGAAAGGGAGAAACTTGGGCTCTTTTTAAAAATTGGGATATCAAATGGCATATGGATGCGGAGTCTCATAGTCAGTATGATTTTGAATTTGTCGAAATCTTATCAGATTATATTGAAGGTGTGGGAGTAGTTGTTGCATACCTGGGTAAATTGAAAGGTTTTACATCTCTCTTCTCTCAACTGGATGGAGGCAAGCGTACCATTCAAATTCCATCAGCTGAGTTATTCAGATTTTCTCACAGGGTTCCATCTTTTAAAATGACTGGTCAGGAAAGAGTTGGTGTTCCTGTAGGCTCTTGGGAACTTGATCCTGTATCCCTGCCAGGGAATATTGAGGAAATTGATGTTCCTGGAGATTTGGATATAAATGTCGGACATTGTCCGTCTAGTGGGAATGGCACAAGGTCTTCAGATATGTCGAAATTTGCCAGGGAGATAGATGCATCTACTGCAAAGCTTAATTTCGAAAGCAACAATTCTTCAAAGGAGAACAAGGATCCCGTTGAACATACTGGTAGTGATCTTTCATCCTCAGCCACAGAGGCATTTGAAATTCCAGATCCCGAGTTCTATAATTTTGATGCTGAGAGGTCCATAGAAAAGTTTCAGGTTGGTCAGATTTGGGCATTTTACGGGGATGAGGATGGACTACCAAAATACTATGGTCAGATTAAGAAGATTAGGATCAGACCAGAACCTGAGTTGCAAGTTACTTATCTTACTAACTGCTGGATACCAGAGAACTGTCTCAGATGGGAAGATAAAGACATGCTTATTTCCATTGGCAGATTTAAAATCAAAACGTGCGCCAGTCCCTACACTTACACTGACACCCGTTCTATTTCACATCAGGTGCAGACTATTACTAACGGTAAGAAGGAATATGAAATTTTTCCAAGGAAAGGCGAAATTTGGGCATTGTACAAGAATTGGACGACTAAAATAAAACGTTCTGATCTGGCAAATTTGAAGTATGACATAGTGGAAGTTGTTGGAGAAAATGATTTGTGGATGGATGTTGTACCTTTGGAGTTGGTAAGTGGTCATAAGTCAGTTTTTAAGAGTAACTTAAATGCACGATCAGCTAGGACCATGAGAATATTTTGGAAAGAGTTGCTGAGGTTCTCCCACCAAATCCCTGCGTTTAAATTAACAGAAGAACATGGGGGCAATCTGAGAGGCTTCTGGGAGCTTGATCCTGGAGCATTACCCCCTTATTATTTTAGCAGCAAATAA 2892 0.407 MECNKEEAVRAKEIAEKKMQNKDFSGARKFVLKAQQLYPDLENINQMLIVCDVHCFADQKLFGNEMDWYKILQIELTANDATIKKQYKKFALQLHPDKNKFSGAEAAFKLIGEAQRVLLDREKRSRLDMNLGRAPMNRATMPSHHHRNVQMNFNPVMQTTVRPSFTNLNPHQQQQSGQTSHQGPNRGRPTFWTMCSHCSVRYEYFLEVLHRSLRCQQCNRPFVAFDIQSTAPTTNSTQQAFGAQNHSQNHGAFNVGVGSQGNVHTHRSHTDSHKKKRHTVDDPVKPNGKRRRKRVAEFSESSESVGSTDSESEEEIRFDSDAVPGFSTHIEQNPRRSTRQKHQVSYKENASDDEGTGSPFGAGEEEHEEAAKINEQNGLAADKKDQRQVKGKQNFYSEESVQNIKEELKEVREKEAVGSSNTDKTSEHSPLKSADQPVQLIYPDAEFSDFEKDKKEESFAAGQIWAIYDTVDGMPRFYALIKKVFSPGFKLRITWFEPDAEEKDEIHWINEQLPVACGEHRLGNTEITEDRLMFSHLIVCEKIGRCRYKVYPRKGETWALFKNWDIKWHMDAESHSQYDFEFVEILSDYIEGVGVVVAYLGKLKGFTSLFSQLDGGKRTIQIPSAELFRFSHRVPSFKMTGQERVGVPVGSWELDPVSLPGNIEEIDVPGDLDINVGHCPSSGNGTRSSDMSKFAREIDASTAKLNFESNNSSKENKDPVEHTGSDLSSSATEAFEIPDPEFYNFDAERSIEKFQVGQIWAFYGDEDGLPKYYGQIKKIRIRPEPELQVTYLTNCWIPENCLRWEDKDMLISIGRFKIKTCASPYTYTDTRSISHQVQTITNGKKEYEIFPRKGEIWALYKNWTTKIKRSDLANLKYDIVEVVGENDLWMDVVPLELVSGHKSVFKSNLNARSARTMRIFWKELLRFSHQIPAFKLTEEHGGNLRGFWELDPGALPPYYFSSK 963
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00968 963 MobiDBLite consensus disorder prediction 275 299 - -
Vimu2g00968 963 MobiDBLite consensus disorder prediction 411 437 - -
Vimu2g00968 963 ProSiteProfiles dnaJ domain profile. 67 131 IPR001623 -
Vimu2g00968 963 MobiDBLite consensus disorder prediction 705 731 - -
Vimu2g00968 963 Pfam Domain of unknown function (DUF3444) 440 643 IPR024593 -
Vimu2g00968 963 Pfam Domain of unknown function (DUF3444) 733 939 IPR024593 -
Vimu2g00968 963 Pfam DnaJ domain 67 128 IPR001623 -
Vimu2g00968 963 PRINTS DnaJ domain signature 69 87 IPR001623 -
Vimu2g00968 963 PRINTS DnaJ domain signature 103 123 IPR001623 -
Vimu2g00968 963 PRINTS DnaJ domain signature 87 102 IPR001623 -
Vimu2g00968 963 MobiDBLite consensus disorder prediction 162 186 - -
Vimu2g00968 963 MobiDBLite consensus disorder prediction 334 349 - -
Vimu2g00968 963 MobiDBLite consensus disorder prediction 236 395 - -
Vimu2g00968 963 CDD DnaJ 67 120 IPR001623 -
Vimu2g00968 963 PANTHER DNAJ HEAT SHOCK AMINO-TERMINAL DOMAIN PROTEIN-RELATED 1 710 - -
Vimu2g00968 963 SMART dnaj_3 66 123 IPR001623 -
Vimu2g00968 963 MobiDBLite consensus disorder prediction 236 265 - -
Vimu2g00968 963 Gene3D DnaJ domain 64 181 IPR036869 -
Vimu2g00968 963 SUPERFAMILY Chaperone J-domain 64 144 IPR036869 -
Vimu2g00968 963 MobiDBLite consensus disorder prediction 360 392 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g00968 Vimu-Chr2 6155259 6158150 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g00968 4 274 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 31.769 6.23e-28 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g00968 - - gmx:100779228 1495.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g00968 2 6155259 6158150 Vimu2g00968 2 6155259 6158150 ECH
Vimu7g01862 7 16941182 16949594 Vimu2g00968 2 6155259 6158150 PCT