Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00967 ATGAACCAGTACCACATCTATGAAGCTATCGGTCGCGGCAGATACTCCACCGTTTACAAAGGCAGGAAAAAGAAGACTATCGAGTATTTCGCCATCAAAAGCGTTGATAAATCGCAGAAAACTAAGGTTCTTGAAGAGGTCAGGATTCTTCACACGTTGGATCATATAAATGTGCTGAAGTTTTATGATTGGTATGAAACTTCTGCTCATTTATGGTTGGTTTTAGAGTATTGCGTCGGAGGGGATTTGCTCTCCATATTACGACAGGATAGTAAATTTCCAGAAGAGTCTGTTCACGATCTTGCTCTTGATTTACTGAAAGCTCTACAGTTTTTACACTCAAATGGAATAATCTATTCCGACTTGAAACCATCCAATATTCTACTTGATGAAAATGGATGCGCAAAGCTATGTGATTTTGGATTAGCGAAGAAATTGAGAGATATAACAAAAGGTTTTTCTTCTTCGTTACCCCGAGCAAAACGCGGAACACCTTCTTACATGGCTCCGGAGCTTTTTGAAGATGGTGGAGTGCATTCTTACGCTTCTGACCTCTGGGCATTAGGATGTGTCCTATATGAATGTTATGCTGGGAGACCACCCTTTGTGGGAAGGGAATTTACTCAACTTGTAAAATCTATCATTTCAGATCCTACTCCACCACTTCCGGGTAATCCTAGCAGACCTTTTGTTAATTTAATTAATTCCCTTTTGGTAAAGGATCCAGCTGAAAGAATACAATGGCCTGAGCTTTGTGGACATGCCGTTTGGAGAACAAAAATTCCTCCGGTGCCTCTTCCTGCTCAACCTGCATTTGATGATATGGTAGAGCTACACATTAGACCCGTCTTATCAGAACATAAATCTTCGCATAACAGGACACCTCCCAAATATCGTGAAAAGGATGTCAAAGGGGTCTTGAAGAAAGACGAGAACTCTATTTTAGTATCTAGAGGCCTTGAGACACCAACAAGGGCAACACCAAATGGCCCCAGAACTCAGATAAAAGGGTCTGGTAGAACAAATGACGTAAAGCAGAAAGATCATTCTAATATTAGCAAGGGTGTGAATCTATTAAGATTGTCAAGAATAGCAAAAACAAATTTACAGAGGGAAAATGAGAAAGAAAACTATCGACGCCCCTTGCCTAATAACTCTGAGAATGATTCTGAAGTTAAAATTGAGAACACTGACATGGAACTTGATTTTAATGAGAATACCGAAGATGATACACATGAAGAAACTGATGGCAACGAACCTGGTGAGAAAATAGACCATCATTTTCTGAATCAGGGAAAAACAGAGGAGATTGAAAATACTGCACACCAGTTCGATACCCCATCTGCTGTTAGCCCTCCAGTCTCAGATGATCTTCATGAATTAACTCCTGACATGTCTGGTGTTACTCCCAGTGTGAGCCCTCAGGTGAAGAAGCATAGAGCTAAAGAAGACTCAGGATCTGCCCTTGAACCTGATTCTTCAAGGTTGTCTAGCAACCTTTCCCAGGTTCTTTGGCATCCATCTGATCTCTCAGTCAGACCTGTAATGCCTAGCAGAAAAGTTGATAAAGTCTCAGAAGTCATTCCTTCACTCCCTTTTGAGGCATTGCAAGCGTCTGATTTTGTTAAGATGCCTAAAGAGCAATTGGAGGCAGTCCACAACCGGATATTAGCCATTTTGAACGGAAATACCAGCATTGGAGAGAAACAGAATGTGATTAGGTACCTCGAGATGTTGAGCATTAATGCTGATGCAGCTAATGTCTTGACCAATGGGCCAATTATGCTTACGCTTGTAAAATTGCTTCGTCAATCCAAGGCATCAGCTTTGCGCGTTCAACTTGCTTCATTGATTGGTCTGTTGATTAGGCACTCCACTTTTGTTGATGACAGTTTGTCTAATTCTGGAATTTTAGGTGCACTGACTGATGGCCTTAGAGACAGGCAGGAAAAAGTTAGGAGGTTTTCCATGGCTGCTTTGGGTGAGTTGCTATTTTATATATCCACTCAAAATGCAGACTGCAAGGATAACAATCAACTTGAATCTCCTTCAAAGGACAATAGGACAACATATGGCTGGCAGGTTCCAAATTCGTTAATTTCGCTTGTGTCATCAATGTTGAGGAAGGGCGAGGATGATATAACTCAATTGTATGCATTGAGAACAATTGAGAATATTTGCAGTCAAGGAGGGTTCTGGGTGGGGAGATTGGCCAGTCAAGATGTTTTTAGTAATCTCTGTTATATCTATAGGGCGGCAGGGAAACAAGAGAGTATGAGGCTCACTGCAGGATCATGCTTGGTGCGCCTTGTTCGTTTTAATCCACCTAGCATTCAGTCTGTTATCGAGAAACTCTCATTCAAGGACCTCGCTTCTACTCTTGTAAAGGGAAGTCCACGAGAGCAGCAAATCAGCTTAAATCTTCTTAACATAGCAATGCTCGGGAGTCACTTGTTCACAAATATTGGAAGATACCTTGTACAACTTGCCGAGGATAAAAATCTAATCCCAAGTCTTTTGGCTCTTGTTGAGCAAGGTAGTGAAGTTTTAAGAGGAAAGGCACTAGTTCTTGTCGCTCTCCTCTGTAAGCATGGCAGGAGGTGGCTTCCACACTTCTTCTGTAGTCAAAAGTTGCTTTCTGTTGTGGACAGGCTGGGAAAAGAGAAAGATGCCTATGTGAGGCAGTGTTTGGATGCATTTGTGCATATTGTGGCATCCAGTATTCCAGGTTTATTGGATATAATAACAGGGGATGTCCAGCAAATGATGGGAGGAAGGCGCCATGGACACATCTCTGCCCTTACCAGCAGATCTCCAAAAGCCAACATTCATTTGTTTCCTGTTGTCCTTCATCTTCTTGGAACTTCAACTTTTAAGCACAAAGTCGTGACACAACAAGTCGTACTTCAGTTGGCGAATCTAATTAAACTTGTAGAGACACCATTTCAGGTACGTGACTCCGCCGTTGTGCCTGTCCTTTTCAGAGAAATGGGAAGAGATGACTTCCAAATAACCCTTCTTCGAATTTTCGAGTCTCTCACAGAGGAATCTCCTATGATTCTTGGCAATGCTGACATTTTCATACGTGAAATCCTCCCTAGTTTGACTGTTCTCTACAAGGGTAACAAGGATGGTGATGCCAGGTTTTTGTGCCTTAAAATTCTTTTTGATGTGATGATCATTCTTTTGAGTGAACCAATTGAAGAAGAGCAGCGATTAAAGGATCTTAAATTCATATCAAATACCCGCTTTCTTCCTCTCTACCCAACCTTGATTGAAGATGAAGACCCTATTCCTATTTATGCCCAGAAACTTCTTGTTATGCTACTGGAGTTCAGTTTTATTACAATTCCAGACATTCTACATATGAAGGCAATTTCACAATGCTTCGAGTTTTTGCTTGGTGATCTCTCAAATGCAAATGTGAATAATGTTAAACTGTGTCTTGCTCTAGCTTCTGCTCCCGAGATGGAGTCGAAATTACTCTCTCATTTAAAGGTGGTTAGGAGGATTGGCAACTTTCTTGAGTTTGTACATGCAAAGGGCATGGAAGATTTGCTGGAACCCACTCTTGGGCTGTGTAGGGCTTTTATAGCACGTTCAGTCGGCTGTGCAAAAGGCTTGAGCAGCACAAGAGAACCAAATCTCTTAGGTGACTATCCTCCCGAGTTGAGTGGTGGTGCTGTTGATCCCCAGCAATGCATAAAAGATATCGCAGACTTTGGAAGCAATTTTGGTGTCTTGCTAGAGTTGAGTGCCTCTGCAGAAACCAGTATTGCCGATATAGCTTCTGAATGTGTTGTTTTACTGTTCAAGGCAGCTCCTAGAGAAGCCACCACTGGTATACTAACCAATCTTCCCAAGGTCACTGTGATCCTAGAGAGCTGGAATAGAGGCATTCCTCACTTGATGGTGCAGCGAATGCTTCATTCTTTAGGTTATGCTTGCAAGCAATACTTACTGCATGCAATGATATTGTCAATATCTAAATCAGAGATTTCAAGAATTGAAGTTGTGGTTTCTGAAATCAAAAGTTCAGGTGTACCACTCTTAGCCAAAACTGCTGGGCTAGCAGCCTTGGAGTTGCAGCGGTTGCCTCGCTGCATTTGA 4110 0.4195 MNQYHIYEAIGRGRYSTVYKGRKKKTIEYFAIKSVDKSQKTKVLEEVRILHTLDHINVLKFYDWYETSAHLWLVLEYCVGGDLLSILRQDSKFPEESVHDLALDLLKALQFLHSNGIIYSDLKPSNILLDENGCAKLCDFGLAKKLRDITKGFSSSLPRAKRGTPSYMAPELFEDGGVHSYASDLWALGCVLYECYAGRPPFVGREFTQLVKSIISDPTPPLPGNPSRPFVNLINSLLVKDPAERIQWPELCGHAVWRTKIPPVPLPAQPAFDDMVELHIRPVLSEHKSSHNRTPPKYREKDVKGVLKKDENSILVSRGLETPTRATPNGPRTQIKGSGRTNDVKQKDHSNISKGVNLLRLSRIAKTNLQRENEKENYRRPLPNNSENDSEVKIENTDMELDFNENTEDDTHEETDGNEPGEKIDHHFLNQGKTEEIENTAHQFDTPSAVSPPVSDDLHELTPDMSGVTPSVSPQVKKHRAKEDSGSALEPDSSRLSSNLSQVLWHPSDLSVRPVMPSRKVDKVSEVIPSLPFEALQASDFVKMPKEQLEAVHNRILAILNGNTSIGEKQNVIRYLEMLSINADAANVLTNGPIMLTLVKLLRQSKASALRVQLASLIGLLIRHSTFVDDSLSNSGILGALTDGLRDRQEKVRRFSMAALGELLFYISTQNADCKDNNQLESPSKDNRTTYGWQVPNSLISLVSSMLRKGEDDITQLYALRTIENICSQGGFWVGRLASQDVFSNLCYIYRAAGKQESMRLTAGSCLVRLVRFNPPSIQSVIEKLSFKDLASTLVKGSPREQQISLNLLNIAMLGSHLFTNIGRYLVQLAEDKNLIPSLLALVEQGSEVLRGKALVLVALLCKHGRRWLPHFFCSQKLLSVVDRLGKEKDAYVRQCLDAFVHIVASSIPGLLDIITGDVQQMMGGRRHGHISALTSRSPKANIHLFPVVLHLLGTSTFKHKVVTQQVVLQLANLIKLVETPFQVRDSAVVPVLFREMGRDDFQITLLRIFESLTEESPMILGNADIFIREILPSLTVLYKGNKDGDARFLCLKILFDVMIILLSEPIEEEQRLKDLKFISNTRFLPLYPTLIEDEDPIPIYAQKLLVMLLEFSFITIPDILHMKAISQCFEFLLGDLSNANVNNVKLCLALASAPEMESKLLSHLKVVRRIGNFLEFVHAKGMEDLLEPTLGLCRAFIARSVGCAKGLSSTREPNLLGDYPPELSGGAVDPQQCIKDIADFGSNFGVLLELSASAETSIADIASECVVLLFKAAPREATTGILTNLPKVTVILESWNRGIPHLMVQRMLHSLGYACKQYLLHAMILSISKSEISRIEVVVSEIKSSGVPLLAKTAGLAALELQRLPRCI 1369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00967 1369 Pfam Protein kinase domain 4 255 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g00967 1369 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Vimu2g00967 1369 Gene3D Transferase(Phosphotransferase) domain 1 1 312 - -
Vimu2g00967 1369 SUPERFAMILY Protein kinase-like (PK-like) 1 290 IPR011009 -
Vimu2g00967 1369 MobiDBLite consensus disorder prediction 401 415 - -
Vimu2g00967 1369 Gene3D - 541 904 IPR011989 -
Vimu2g00967 1369 MobiDBLite consensus disorder prediction 317 340 - -
Vimu2g00967 1369 CDD STKc_ULK4 3 257 - -
Vimu2g00967 1369 ProSitePatterns Serine/Threonine protein kinases active-site signature. 117 129 IPR008271 GO:0004672|GO:0006468
Vimu2g00967 1369 FunFam Aurora kinase A 1 81 - -
Vimu2g00967 1369 ProSiteProfiles Protein kinase domain profile. 4 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g00967 1369 SMART serkin_6 4 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g00967 1369 MobiDBLite consensus disorder prediction 314 355 - -
Vimu2g00967 1369 SUPERFAMILY ARM repeat 552 905 IPR016024 -
Vimu2g00967 1369 MobiDBLite consensus disorder prediction 444 496 - -
Vimu2g00967 1369 MobiDBLite consensus disorder prediction 367 425 - -
Vimu2g00967 1369 MobiDBLite consensus disorder prediction 367 382 - -
Vimu2g00967 1369 PANTHER SERINE/THREONINE-KINASE ULK4-LIKE PROTEIN-RELATED 1 1366 IPR044591 GO:0000911|GO:0000914|GO:0008017
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g00967 Vimu-Chr2 6138611 6145866 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g00967 2 258 MAP Kinase Kinase Kinase AT3G13530 32.197 8.43e-36 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK ULK_ULK4 Vimu2g00967 Pkinase 1.4e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g00967 K17545 - gmx:100817590 2381.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g00967 2 6138611 6145866 Vimu2g00967 2 6138611 6145866 ECH