Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00958 ATGGGCATAATCAGAAGCATGAGATCGCGGTCGCATCGCGTCGTGCAGGAGCAAGAAGAGTGTGTTGGTGACAGCATGAGACAGAGTTGTTGGGCCAACATGCCCCAAGAGCTTCTCCGAGAGGTTCTCCTACGAATCGAGGCCTCCGAGGACACGTGGCCGCCGCGGAAGAGTGTCGTCGCCTGCGCCGGCGTTTGCCGCAGCTGGAGACAAATCACCAAAGACATTGTCAAAACACCCGAGCTTTCCTCAAAAATCACCTTCCCCATTTCTGTTAAACAGCCTGGCCCAAGGGAGAATCTGCTCCGGTGCTTTATAAAGCGCAACCGGTCAACCCAAACATACTATTTGTTTCTCAGTTTAACCACTACACTAGCCGAAGATGGGAAGTTCCTTCTGGCTGCACGCAAGTGCAGACGTCCGACATGCACAGATTATATCATCTCTCTTGATGCAGACGATATGTCAAAGGGAAGCAACTCCTATGTTGGGAAACTAAGATCAAATTTTCTTGGAACAAAGTTCACAATCTATGACAGCCAGCCACCTCACTCAGGGGCAAGGATTATGAAAAGTCGCTCCACAAGGCTGGTGAATCTAAAACAAGTTTCGCCAAAGGTCCCTACAGGCAATTATCCAGTGGCTCACATCTCATATGAATTGAATGTGCTAGGCTCCCGGGGGCCTAGGAGAATGCATTGTGTTATGGATTCCATTCCTGCCACTGCAATTGAAGCTGGAGGAGTAGCTCCTACACAGACTGAGTTTTCTCTTAACAACATAGATATGTTTCCTTCATTCCCTTTTTTCCGATCAAAATCAAATCGTGTAGAAAACACAATGTCTGGACCCCTGGTTGATCAAAAGGATGGGATGCTCGTGTTAAAAAACAAGTCTCCTAGGTGGCATGAGCAGCTCCAGTGTTGGTGCTTAAACTTTCATGGCCGGGTGACAATTGCCTCGGTTAAAAACTTTCAGCTAGTAGCTTCTGCAGAAAATGGACCTGCTGGACCAGAGCATGATAAGATTATCCTCCAATTTGGAAAAGTTGGGAAGGATTTGTTTACAATGGATTACCGATACCCTATTTCGGCTTTCCAGGCCTTTGCGATGTGCCTCAGCAGCTTTGATACCAAGATTGCTTGTGAATGA 1152 0.474 MGIIRSMRSRSHRVVQEQEECVGDSMRQSCWANMPQELLREVLLRIEASEDTWPPRKSVVACAGVCRSWRQITKDIVKTPELSSKITFPISVKQPGPRENLLRCFIKRNRSTQTYYLFLSLTTTLAEDGKFLLAARKCRRPTCTDYIISLDADDMSKGSNSYVGKLRSNFLGTKFTIYDSQPPHSGARIMKSRSTRLVNLKQVSPKVPTGNYPVAHISYELNVLGSRGPRRMHCVMDSIPATAIEAGGVAPTQTEFSLNNIDMFPSFPFFRSKSNRVENTMSGPLVDQKDGMLVLKNKSPRWHEQLQCWCLNFHGRVTIASVKNFQLVASAENGPAGPEHDKIILQFGKVGKDLFTMDYRYPISAFQAFAMCLSSFDTKIACE 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00958 383 FunFam Tubby-like F-box protein 88 383 - -
Vimu2g00958 383 ProSitePatterns Tub family signature 1. 313 326 IPR018066 -
Vimu2g00958 383 PRINTS Tubby superfamily signature 313 329 IPR000007 -
Vimu2g00958 383 PRINTS Tubby superfamily signature 295 312 IPR000007 -
Vimu2g00958 383 PRINTS Tubby superfamily signature 211 238 IPR000007 -
Vimu2g00958 383 PRINTS Tubby superfamily signature 340 359 IPR000007 -
Vimu2g00958 383 PRINTS Tubby superfamily signature 162 186 IPR000007 -
Vimu2g00958 383 PRINTS Tubby superfamily signature 146 162 IPR000007 -
Vimu2g00958 383 PRINTS Tubby superfamily signature 361 383 IPR000007 -
Vimu2g00958 383 Pfam Tub family 92 378 IPR000007 -
Vimu2g00958 383 SUPERFAMILY F-box domain 26 75 IPR036047 GO:0005515
Vimu2g00958 383 SUPERFAMILY Tubby C-terminal domain-like 80 383 IPR025659 -
Vimu2g00958 383 PANTHER TUBBY-RELATED 16 381 - -
Vimu2g00958 383 Pfam F-box domain 31 78 IPR001810 GO:0005515
Vimu2g00958 383 CDD F-box_AtTLP-like 31 75 - -
Vimu2g00958 383 Gene3D - 24 84 - -
Vimu2g00958 383 Gene3D Tubby Protein; Chain A 88 383 IPR025659 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g00958 Vimu-Chr2 6087414 6091153 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g00958 8 383 TUB Transcription Factor Family AT2G47900 72.559 0.0 568
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Vimu2g00958 Tub 1.3e-112 CL0395
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g00958 2 6087414 6091153 Vimu2g00958 2 6087414 6091153 ECH
Vimu7g01856 7 16881612 16883588 Vimu2g00958 2 6087414 6091153 PCT