Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00948 TTGGAGTGGAAGGAGTTGGTTACTGGAGACGGAATCGTCGTTTCCGTGGTGGACCTCCACTTGCGGGAGGGAGGCGGAAGGAGCACCACCGACACCGTTGCACTGGAGACGATCGCCGAAGTCACTGCTAGTGTAGGAGAAGAGTCAAGGACAAGCCAAAACCACCATCAACAAAAACAGAATCTTGCCAATTGCAGAAACCCCCCTCTCAGCCTTCTCTTCACCCTCTCTTTTCCCAAACTCATGGAACGTTCTGTCATCGAACGTCTTGATTTTGGGAAGATGGGATACGGGTGCAAACATTACAGAAGAAGATGCAGGATTCGAGCTCCATGTTGCAATGAGCTCTACTCTTGCCGTCATTGTCATAACGAGGCAACGAGCATGCTGAGCAAACCTCTTGATCGTCACGAACTCGTTCGCCAGGATGTTGAACATGTTGTTTGTTCAGTTTGTGATACAGAGCAGCCAGTTGCCCAAGTTTGTACAAACTGCGGTGTCAGAATGGGAGAATATTTTTGCAGCATCTGCAAATTCTTCGATGATGAGACCGGGAAAGAACATTTTCATTGTGACGATTGTGGGATATGCAGAGTGGGAGGTCGTGAGAATTTTTTCCACTGCAAGAAGTGTGGGTCTTGCTATTCAAATGGTCTGCGTGATAATCATTTGTGTGTGGAGAACTCCATGAGGCATCATTGTCCCATTTGCTATGAGTACCTTTTTGACTCATTGAAAGACACTGCTGTTATGAAATGTGGTCACACGATGCATTCTGAATGTTACCACGAGATGATAAAGCGCGACCAGTATTGCTGTCCCATATGCTCCAAGTCGGTAATTGACATGTCTAGGACATGGAAGAGAATTGACGAAGAGATTGAAGCAACTGTCATGCCTGAGGACTATCAGAACAGAAAGCGCAGTGTGTTTGAACATCCCGAGGTGCTAGTAATTGTGCTTGCCAGTGATGCATTGATGTAG 984 0.4675 MEWKELVTGDGIVVSVVDLHLREGGGRSTTDTVALETIAEVTASVGEESRTSQNHHQQKQNLANCRNPPLSLLFTLSFPKLMERSVIERLDFGKMGYGCKHYRRRCRIRAPCCNELYSCRHCHNEATSMLSKPLDRHELVRQDVEHVVCSVCDTEQPVAQVCTNCGVRMGEYFCSICKFFDDETGKEHFHCDDCGICRVGGRENFFHCKKCGSCYSNGLRDNHLCVENSMRHHCPICYEYLFDSLKDTAVMKCGHTMHSECYHEMIKRDQYCCPICSKSVIDMSRTWKRIDEEIEATVMPEDYQNRKRSVFEHPEVLVIVLASDALM 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00948 327 CDD RING-H2_Pirh2-like 233 277 - -
Vimu2g00948 327 Pfam Zinc finger, C3HC4 type (RING finger) 234 276 IPR018957 GO:0046872
Vimu2g00948 327 ProSiteProfiles Zinc finger CTCHY-type profile. 169 233 IPR017921 -
Vimu2g00948 327 SUPERFAMILY RING/U-box 233 283 - -
Vimu2g00948 327 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 223 316 IPR013083 -
Vimu2g00948 327 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 54 307 - -
Vimu2g00948 327 SUPERFAMILY Zinc hairpin stack 170 227 IPR037275 -
Vimu2g00948 327 ProSiteProfiles Zinc finger RING-type profile. 234 277 IPR001841 -
Vimu2g00948 327 ProSiteProfiles Zinc finger CHY-type profile. 92 167 IPR008913 GO:0008270
Vimu2g00948 327 SMART ring_2 234 276 IPR001841 -
Vimu2g00948 327 Pfam CHY zinc finger 99 179 IPR008913 GO:0008270
Vimu2g00948 327 SUPERFAMILY CHY zinc finger-like 96 168 IPR037274 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g00948 Vimu-Chr2 6045903 6050332 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g00948 78 306 C2H2 Transcription Factor Family AT3G18290 38.272 1.67e-46 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g00948 K10144 - gmx:100812246 465.307
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g00948 2 6045903 6050332 Vimu2g00948 2 6045903 6050332 ECH
Vimu7g01847 7 16833502 16836265 Vimu2g00948 2 6045903 6050332 PCT