Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00946 ATGGCGAGACCTTCCAAGCCCCACTCATCTTCGGACGAAGCACTCTCCAATGCTTCGAGTTCATCCGAGGAAAAGGAGCTGGTCAACGAGCAGATCAACGAAGAGGAAGATGAGGAGGAGCTTGAGGCGGTGGCCCGCTCTGCCAGTTCCGACGATGATGACGACGAAGGTGCCGCTGGTAATCCTCCGGATTCTGACGAAGATCCAGCTGGGGATGATGACCAGGATGAGGATAATGTTGATCCGGCAATTAGCAAGCGAGAGAAGACTAGATTAAAGGAAATGCAGAAAATGAAGAAACAGAAAATCCAGGAGATACTGGATGCACAAAATGCGGCCATAGATGCTGACATGAATAATAGAGGAAAGGGGCGTCTGAAGTATCTCTTGCAGCAGACTGAGCTGTTCGCTCATTTTGCAAAAGGTGATCAAAGTTCTTCTCAAAAGTCAAGGGGAAGGGGTCGCCATGCATCGAAAGTCACCGAGGAAGAGGAAGATGAAGAATACCTTAAAGAAGAAGAAGATGGTGTAGCCAGCACACGTCTGGTGACGCAACCATCATGCATCCAAGGGAAGATGAGGGATTACCAACTGGCTGGACTAAACTGGCTCATACGATTGTATGAGAATGGGATAAATGGAATTCTGGCTGATGAAATGGGGCTTGGTAAAACATTGCAAACCATATCTTTGTTGGGTTATTTGCACGAGTTCAGAGGAATAAAAGGCCCTCATATGGTGGTTGCTCCAAAATCTACTCTTGGAAATTGGATGAATGAAATTCGGCGCTTTTGTCCTGTTCTACGTGCAATTAAGTTTCTTGGCAACCCTGATGAAAGGAGACATATAAAAGAGGAACTTCTGGTTGCTGGCAAGTTTGATGTCTGTGTTACCAGTTTTGAAATGGCAATCAAGGAGAAGTCTGTGTTGCGTCGATTTAGTTGGCGCTACATAATTATTGATGAAGCTCATCGAATCAAGAATGAAAATTCCTTGCTGTCAAAAACAATGAGACTGTACAGTACAAACTATCGCCTTCTTATTACTGGCACACCACTTCAGAATAATCTTCACGAACTCTGGTCTCTTCTCAACTTTCTTCTGCCCGAAATTTTTAGTTCTGCTGAAACTTTTGATGAATGGTTTCAAATCTCTGGTGAAAATGACCAACAGGAGGTTGTTCAACAATTACACAAGGTCCTTAGGCCATTTCTCCTTCGAAGGTTGAAATCAGACGTTGAGAAAGGGCTGCCACCGAAAAAGGAAACTATTCTTAAAGTAGGCATGTCCCAGATGCAGAAACAGTATTATAGAGCATTACTTCAGAAGGATCTTGAAGTTGTAAATGCTGGTGGTGAAAGGAAACGCCTCCTTAACATAGCTATGCAACTACGCAAATGTTGTAATCATCCATATCTTTTTCAAGGTGCTGAACCTGGTCCTCCCTACACAACAGGAGATCATCTCATTACAAATGCTGGTAAAATGGTTCTTTTGGACAAGTTACTTCCTAAATTGAAAGAGCGTGATTCTAGGGTCCTTATATTTTCTCAGATGACGAGGCTTCTAGACATTCTTGAAGATTATTTAATGTTTCGTGGATATCAATATTGTCGCATTGATGGAAATACTGGTGGGGATGATCGAGATGCTTCCATTGATGCTTTCAACAAACCAGGAAGTGAGAAATTTGTCTTCCTGTTATCTACTCGTGCTGGAGGTCTTGGAATTAATCTTGCTACTGCTGATGTTGTCATTCTGTATGACAGTGACTGGAACCCACAAGTTGACTTGCAGGCTCAGGATCGTGCTCATAGGATTGGTCAAAAGAAGGAAGTTCAAGTTTTTCGCTTTTGTACCGAGTATACAATTGAAGAAAAGGTCATTGAAAGGGCCTACAAAAAGCTTGCACTTGATGCTTTGGTGATTCAGCAAGGGAGATTAGCTGAGCAGAAGACGGTAAATAAAGATGAGTTGCTTCAAATGGTTAGATTTGGGGCTGAAATGGTTTTCAGTTCCAAGGATAGTACTATTACAGATGAGGATATTGATAGAATTATTGCTAAAGGAGAGGAGGCAACTGCTGAACTTGATGCCAAGATGAAGAAATTTACTGAAGACGCCATCAAATTTAAGATGGATGACACTGCGGAGCTGTATGATTTTGATGATGACAAGGTAAAGATGACACTTTGTTTTAACTTTGACAACTTTTTGTTGCTCTGTACTCAACCTTCTATCCCCTTCCCCCTTATCTATTCAACTGACATTGGCATGCCAATTTCCTTTTGTGTAAAGGACGAGAACAGATTTGATATTAAAAAAATTGTTAGTGAGAACTGGATTGAACCACCGAAAAGGGAGCGGAAGCGAAACTACTCAGAGTCTGAGTACTTTAAGCAAACAATGCGTCAAGGTGGTCCTACTAAACCAAAAGAGCCTCGTATTCCTAGGATGCCCCAGTTGCATGATTTTCAGTTTTTCAACACGCAGAGGTTGAGTGAGCTGTACGAAAAGGAAGTTCGCTATCTCATGCAAGCACACCAGAAGAATCAGATAAAGGACTCAATAGATGTTGATGAACCAGAAGAGGTGGGAGATCCGTTGACTGCTGAAGAGTTGGAGGAAAAGGAGCGCTTGCTAGAAGAGGGATTTTCATCCTGGAGCCGGAGGGATTTTAATACTTTCATTAGGGCCTGCGAAAAATATGGCAGAAATGATATAAAAAGTATTGCTTCTGAGATGGAAGGAAAAACTGAGGAGGAAGTTGAAAGATATGCGAAGGTCTTCAAAGAAAGATACAAGGAATTAAATGATTATGACAGAATTATTAAAAACATTGAAAGGGGGGAGGCAAGAATTTCTCGGAAAGATGAGATCATGAAAGCTATTGGGAAAAAGTTGGACCGGTACAAGAATCCTTGGCTAGAGTTAAAGATACAATATGGGCAAAACAAAGGGAAGTTGTACAATGAAGAATGTGACAGATTCATGATATGCATGGTTCACAAACTTGGCTATGGGAATTGGGATGAGCTAAAGGCGGCATTTCGAACTTCACCCTTGTTTCGATTTGATTGGTTTGTTAAGTCTCGCACAACTCAGGAATTGGCAAGAAGGTGTGACACCCTCATTCGTCTAGTAGAAAAGGAAAACCAAGAATATGATGAGAGGGAGAGACAAGCTCGCAAGGAGAAGAAACTTGCTAAAAACATGACCCCATCAAAGCGTGCTTTGGCAAGACAGACAGATAGTCCATCTTTGAAGAAGCGGAAGCAGTTAACAATGGATGATTACGCAAGCACGGTATGCATTTCTTGGGAAGAGAAGAAAATAAATGGACATGTGGTCTCTATATTGAATGGGATAAGTAAAGGATTGTAG 3384 0.4187 MARPSKPHSSSDEALSNASSSSEEKELVNEQINEEEDEEELEAVARSASSDDDDDEGAAGNPPDSDEDPAGDDDQDEDNVDPAISKREKTRLKEMQKMKKQKIQEILDAQNAAIDADMNNRGKGRLKYLLQQTELFAHFAKGDQSSSQKSRGRGRHASKVTEEEEDEEYLKEEEDGVASTRLVTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGIKGPHMVVAPKSTLGNWMNEIRRFCPVLRAIKFLGNPDERRHIKEELLVAGKFDVCVTSFEMAIKEKSVLRRFSWRYIIIDEAHRIKNENSLLSKTMRLYSTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYRALLQKDLEVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGDHLITNAGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMFRGYQYCRIDGNTGGDDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLAEQKTVNKDELLQMVRFGAEMVFSSKDSTITDEDIDRIIAKGEEATAELDAKMKKFTEDAIKFKMDDTAELYDFDDDKVKMTLCFNFDNFLLLCTQPSIPFPLIYSTDIGMPISFCVKDENRFDIKKIVSENWIEPPKRERKRNYSESEYFKQTMRQGGPTKPKEPRIPRMPQLHDFQFFNTQRLSELYEKEVRYLMQAHQKNQIKDSIDVDEPEEVGDPLTAEELEEKERLLEEGFSSWSRRDFNTFIRACEKYGRNDIKSIASEMEGKTEEEVERYAKVFKERYKELNDYDRIIKNIERGEARISRKDEIMKAIGKKLDRYKNPWLELKIQYGQNKGKLYNEECDRFMICMVHKLGYGNWDELKAAFRTSPLFRFDWFVKSRTTQELARRCDTLIRLVEKENQEYDERERQARKEKKLAKNMTPSKRALARQTDSPSLKKRKQLTMDDYASTVCISWEEKKINGHVVSILNGISKGL 1127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00946 1127 SMART ultradead3 189 381 IPR014001 -
Vimu2g00946 1127 Pfam HAND 797 879 IPR015194 GO:0003677|GO:0006338|GO:0031491
Vimu2g00946 1127 CDD SANT 887 931 IPR001005 -
Vimu2g00946 1127 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 89 1093 - -
Vimu2g00946 1127 ProSiteProfiles SANT domain profile. 883 935 IPR017884 -
Vimu2g00946 1127 FunFam ISWI chromatin-remodeling complex ATPase CHR11 isoform A 884 938 - -
Vimu2g00946 1127 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 205 370 IPR014001 -
Vimu2g00946 1127 MobiDBLite consensus disorder prediction 140 173 - -
Vimu2g00946 1127 Gene3D - 972 1075 - -
Vimu2g00946 1127 MobiDBLite consensus disorder prediction 1055 1090 - -
Vimu2g00946 1127 CDD DEXHc_SMARCA1_SMARCA5 190 410 IPR044754 GO:0005524
Vimu2g00946 1127 MobiDBLite consensus disorder prediction 1 97 - -
Vimu2g00946 1127 Pfam Helicase conserved C-terminal domain 496 608 IPR001650 -
Vimu2g00946 1127 Gene3D - 884 938 - -
Vimu2g00946 1127 FunFam ISWI chromatin-remodeling complex ATPase CHR11 972 1075 - -
Vimu2g00946 1127 FunFam Chromatin-remodeling complex ATPase 194 409 - -
Vimu2g00946 1127 MobiDBLite consensus disorder prediction 9 26 - -
Vimu2g00946 1127 Gene3D - 414 706 IPR027417 -
Vimu2g00946 1127 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 173 408 IPR027417 -
Vimu2g00946 1127 Pfam SNF2-related domain 206 473 IPR000330 GO:0005524|GO:0140658
Vimu2g00946 1127 Gene3D - 194 409 IPR038718 -
Vimu2g00946 1127 Gene3D ISWI, HAND domain 785 883 IPR036306 GO:0003677|GO:0006338|GO:0031491
Vimu2g00946 1127 FunFam ISWI chromatin-remodeling complex ATPase CHR11 785 883 - -
Vimu2g00946 1127 Coils Coil 18 42 - -
Vimu2g00946 1127 Coils Coil 92 112 - -
Vimu2g00946 1127 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 498 649 IPR001650 -
Vimu2g00946 1127 Coils Coil 1041 1072 - -
Vimu2g00946 1127 SMART sant 986 1047 IPR001005 -
Vimu2g00946 1127 SMART sant 884 933 IPR001005 -
Vimu2g00946 1127 CDD SF2_C_SNF 494 619 - -
Vimu2g00946 1127 SUPERFAMILY HAND domain of the nucleosome remodeling ATPase ISWI 796 886 IPR036306 GO:0003677|GO:0006338|GO:0031491
Vimu2g00946 1127 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 410 691 IPR027417 -
Vimu2g00946 1127 FunFam ISWI chromatin-remodeling complex ATPase CHR11 414 706 - -
Vimu2g00946 1127 MobiDBLite consensus disorder prediction 80 97 - -
Vimu2g00946 1127 Gene3D iswi atpase 939 971 - -
Vimu2g00946 1127 SUPERFAMILY Homeodomain-like 939 1061 IPR009057 -
Vimu2g00946 1127 MobiDBLite consensus disorder prediction 1055 1072 - -
Vimu2g00946 1127 SMART helicmild6 524 608 IPR001650 -
Vimu2g00946 1127 Pfam SLIDE 941 1051 IPR015195 GO:0003677|GO:0005634|GO:0006338
Vimu2g00946 1127 SUPERFAMILY Homeodomain-like 887 937 IPR009057 -
Vimu2g00946 1127 MobiDBLite consensus disorder prediction 54 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g00946 Vimu-Chr2 6016506 6028648 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g00946 165 635 RAD5 or RAD16-like Gene Family AT1G02670 26.667 2.47e-41 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vimu2g00946 SNF2_N 6.7e-72 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g00946 K11654 - gmx:100782649 1911.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g00946 2 6016506 6028648 Vimu2g00946 2 6016506 6028648 ECH
Vimu7g01845 7 16819259 16828632 Vimu2g00946 2 6016506 6028648 PCT