Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00945 TTCTTCGATTGGTTGATCTGCTTTCTGGGGCAAGTTGGTGTCGATGAGGATCACGTTCTGAGGCATCCACTGCATTATTCCTTGGTGGGTTTTGTAAGGGGTGGCTTTGATTTGCTTGGATTTGATATGGGTGGGTGTTTTCCTTGTTTTGGATCATCCAACAAGGAGGACAGTGGTGGGGTGAGGGTCAAGGAGGTGCCCAACAAGGATTCTTCTTTTAAGGAAGCTGCTTCTCTTGTTCCTCAGTCTCATCACCCCAGCAGGGCAAACACAGGTTTTCATTTTGCCCTTTTGACAATTCTGGGACGCGAGGCAGATGCTGGGTCCAGTCCAATTGCTGCATTTTCTGTAGATTTATACCAGATGTTCTTCTGTTGCTTTTGCTCGATCTTATCTTTGATTATCTATTCAGATAAATCGAAATCATCACGAAGTGGCGCAGATGCTAAGAAGGAAGCACCGGTTCCAAAGGATGGCCCCACAGCCCATATTGCTGCACAAACATTTACATTCCGAGAGCTTGCAGCTGCTACAAAGAATTTCAGGCCAGAATGCTTACTAGGCGAAGGGGGCTTTGGACGTGTTTACAAAGGTCGCCTCGAGAGCACAGGACAAGTAGTTGCTGTAAAACAGCTAGACCGAAATGGTCTCCAAGGAAATCGGGAATTTTTGGTGGAAGTTCTCATGCTCAGTCTCTTACATCATCCCAATCTTGTGAACTTAATTGGTTATTGTGCAGATGGTGATCAGCGGTTGCTTGTTTATGAATTTATGCCACTGGGGTCTTTGGAGGATCATTTACACGATCTTCCTCCTGACAAGGAGCCTCTGGACTGGAACACTAGGATGAAGATAGCAGCTGGAGCTGCAAAGGGATTGGAATATTTGCATGACAAGGCAAATCCGCCAGTGATATATAGAGACTTAAAATCATCCAACATCCTCCTAGACGAGGGTTACCATCCCAAGTTGTCGGATTTTGGGCTGGCAAAACTTGGTCCGGTCGGCGACAAGACTCATGCACGGCCTCTCTTCAAGGACCGTCGGAAATTCCCAAAAATGGCTGATCCTCTACTTCAAGGCCGATACCCGATGCGAGGACTGTATCAAGCACTTGCAGTTGCTGCAATGTGTCTGCAGGAGCAAGCTGCTACAAGGCCTCTGATTGGGGATGTGGTGACTGCTCTCACATATCTGGCCTCACAGACATATGATCCAAATGCAGCCAACCAATCCAACAGGGTTGGCCCCTCAACCCCAAGGATGAGGGACGACAGAAGGAGCCTGGCCGATGGTGTGGACAGCCCTGACCGGCGCCTCGGCTCCCCTTCCACGCACCGAAACTCCCCAGACTTCAGGAAGAGAGACAGCAGGGATGCAAGCATGGGGACCGAGTTAGGCAGCAGGATGGACACGGGTGGTGGCTCAGGGAGGAAATGGGGATTGGATGATTATGAAAGGCAGGAGTCTCAGAGAGACAGCCCTGTAAATACTGGAAGAGCCAGAGAGACTCCATGGAACCGGGACCTGGACCGGGAGCGTGCGGTGGCCGAAGCAAAAGTCTGGGGTGAGAATTGGAGAGAGAAGAAGAAAGCAAATGCCATGGGTAGCTTCGATGCTACAAATGACTGA 1632 0.4969 FFDWLICFLGQVGVDEDHVLRHPLHYSLVGFVRGGFDLLGFDMGGCFPCFGSSNKEDSGGVRVKEVPNKDSSFKEAASLVPQSHHPSRANTGFHFALLTILGREADAGSSPIAAFSVDLYQMFFCCFCSILSLIIYSDKSKSSRSGADAKKEAPVPKDGPTAHIAAQTFTFRELAAATKNFRPECLLGEGGFGRVYKGRLESTGQVVAVKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEFMPLGSLEDHLHDLPPDKEPLDWNTRMKIAAGAAKGLEYLHDKANPPVIYRDLKSSNILLDEGYHPKLSDFGLAKLGPVGDKTHARPLFKDRRKFPKMADPLLQGRYPMRGLYQALAVAAMCLQEQAATRPLIGDVVTALTYLASQTYDPNAANQSNRVGPSTPRMRDDRRSLADGVDSPDRRLGSPSTHRNSPDFRKRDSRDASMGTELGSRMDTGGGSGRKWGLDDYERQESQRDSPVNTGRARETPWNRDLDRERAVAEAKVWGENWREKKKANAMGSFDATND 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00945 543 FunFam Protein kinase superfamily protein 258 332 - -
Vimu2g00945 543 MobiDBLite consensus disorder prediction 419 434 - -
Vimu2g00945 543 Gene3D Transferase(Phosphotransferase) domain 1 258 352 - -
Vimu2g00945 543 FunFam Serine/threonine-protein kinase PBS1 154 257 - -
Vimu2g00945 543 MobiDBLite consensus disorder prediction 406 510 - -
Vimu2g00945 543 Pfam Protein kinase domain 186 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g00945 543 ProSitePatterns Serine/Threonine protein kinases active-site signature. 304 316 IPR008271 GO:0004672|GO:0006468
Vimu2g00945 543 ProSitePatterns Protein kinases ATP-binding region signature. 187 210 IPR017441 GO:0005524
Vimu2g00945 543 MobiDBLite consensus disorder prediction 448 462 - -
Vimu2g00945 543 PANTHER OS07G0668900 PROTEIN 340 408 - -
Vimu2g00945 543 Gene3D Phosphorylase Kinase; domain 1 154 257 - -
Vimu2g00945 543 ProSiteProfiles Protein kinase domain profile. 181 452 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g00945 543 SUPERFAMILY Protein kinase-like (PK-like) 167 410 IPR011009 -
Vimu2g00945 543 SMART serkin_6 181 399 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g00945 Vimu-Chr2 6009819 6015527 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g00945 161 401 Glycoside Hydrolase AT3G07070 58.940 2.53e-112 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Vimu2g00945 Pkinase 3e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g00945 - - ming:122091519 614.764