Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00937 ATGACATATGCAAAATCTCCTTTTCCTTCTCCCATGATGAAGTCACTGTCTTTAAAAGACTTGGCATTACTTCACCCTTTTCACTCACATTCTCTTGTTTTCTCCCTTGAGGTGACACTATTTAAATTCTCTCCCCCTCAACAGACACATATATTTCTTGCCATTTTCCAAGCCATGTCTACCTCTAGAACCTCAGATGTTTCCCTCAAAGGATATCAGTCTAAACCAACCCAAATGAATTTGTCTCTTCTTCAACGTAATGCATCAACTTCTGGTGAGAGAAGAGGGCGAGGAAAGCAAGCAGAACCTGGAAGGTTTCTTGGGGTGAGAAGACGCCCTTGGGGTAGATATGCTGCTGAAATCAGAAATCCTTTAACTAAAGAAAGACATTGGCTTGGAACATTTGACACTGCCGAAGAAGCAGCTCTTGCTTATGACAGAGCTGCTCTGTCCATGAAAGGATGCCAAGCAAGAACCAACTTCGTATACTCTAAAGATACCAACATTTTCCACAATGCTCTCACTCCTTTAAATTCTCAACCTCTCTTGCCACCTTCACATAACAATCACAACAACATGCAACTAACCAATCAAACTACCCTATCTCACCTTGCTACTTTCACTTCCCACATTGAAAACCCTTCTTCTGACTTATATGCTGACAGTGACACTGCTTTTGGGTCACCTCAGGATGATAATTTCTTCTTCTCCACTGACTCTAACTCTGGTTACCTTGAATGCATAGTTCCAGGTAACTGTTTCAAGAAGAGCAATGCCAGTGCTTCAGGTCGTGACCTAGAGGTTGGCCACGTTAACTCAAACTCCATGCAGGTTCAGCCACATTTTGACACCACTCAAGAAGCCTTCAACATGCAAGCAACAGTAGCACCTAACTATGCAGATTTTTCTTGCCCAACTGATCTTGGTAAAGGATTATGGGATAATCATCAATCATGGGAATATTGCAGTTCCAATGAACTGGCAGCTATGTTTAAAAATCCATCAAGGGTTGTTGAGGAAGGGTGCATGGGTCCCTTCACTGATAGCTCAAACTATGAGCTAATGACTCAGGTTGTTTCTTCAACTACATATTCTCCATCAGTGCCTCCCTTTGGGAATGTTGGCTCGGGATACTCACCCTTCTGA 1146 0.4267 MTYAKSPFPSPMMKSLSLKDLALLHPFHSHSLVFSLEVTLFKFSPPQQTHIFLAIFQAMSTSRTSDVSLKGYQSKPTQMNLSLLQRNASTSGERRGRGKQAEPGRFLGVRRRPWGRYAAEIRNPLTKERHWLGTFDTAEEAALAYDRAALSMKGCQARTNFVYSKDTNIFHNALTPLNSQPLLPPSHNNHNNMQLTNQTTLSHLATFTSHIENPSSDLYADSDTAFGSPQDDNFFFSTDSNSGYLECIVPGNCFKKSNASASGRDLEVGHVNSNSMQVQPHFDTTQEAFNMQATVAPNYADFSCPTDLGKGLWDNHQSWEYCSSNELAAMFKNPSRVVEEGCMGPFTDSSNYELMTQVVSSTTYSPSVPPFGNVGSGYSPF 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00937 381 FunFam Ethylene-responsive transcription factor 2 105 163 - -
Vimu2g00937 381 CDD AP2 105 161 IPR001471 GO:0003700|GO:0006355
Vimu2g00937 381 Gene3D AP2/ERF domain 105 163 IPR036955 GO:0003700|GO:0006355
Vimu2g00937 381 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 80 262 - -
Vimu2g00937 381 PRINTS Ethylene responsive element binding protein signature 106 117 IPR001471 GO:0003700|GO:0006355
Vimu2g00937 381 PRINTS Ethylene responsive element binding protein signature 128 144 IPR001471 GO:0003700|GO:0006355
Vimu2g00937 381 ProSiteProfiles AP2/ERF domain profile. 105 162 IPR001471 GO:0003700|GO:0006355
Vimu2g00937 381 SUPERFAMILY DNA-binding domain 106 163 IPR016177 GO:0003677
Vimu2g00937 381 Pfam AP2 domain 108 154 IPR001471 GO:0003700|GO:0006355
Vimu2g00937 381 SMART rav1_2 105 168 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g00937 Vimu-Chr2 5894930 5896075 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g00937 59 255 AP2-EREBP Transcription Factor Family AT5G18560 46.215 4.72e-54 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vimu2g00937 AP2 2.5e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g00937 - - vum:124834998 722.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g01838 7 16747537 16748380 Vimu2g00937 2 5894930 5896075 PCT