Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00936 CCTCTCATTGTGCTTTTCCGATTACCGTCAAATCAGCTCCGTTCTCCGGTTCGGGTCGGTGCAATGGAGCAGTACGGCCGGTCCAGTGAAGGTTCGCGGTCTGATCCGTCCCCGGAATGGGCCGGGCCCGGAGCCCAAACCGGTCTTGAAGAGCCTATGTGGCAATTGGGGCTGGGTGCTGCGGAGGAATCGTATCCGCAACGCCCCGATGGGGCTGATTGCACTTACTACTTGAGGACCGGTTTCTGTGGCTTCGGTTCGCGGTGTCGGTACAATCACCCTCGTGACCGTGGCATGGTTGTTGGAGCTGAGAGGGCTGCAGGGGAGTATCCGGAACGAGTTGGCCAGCCTGTGTGCCAGTATTACATGAGGACAAGAACGTGCAAGTTTGGTTCGTCTTGCAAGTACCACCACCCGAGGCTAGCAGGAGGTGCTGTTACCCCTGTGTCGCTAAACTATTATGGATATCCATTGCGTCCGGGTGAAAAGGAGTGCTCGTATTATGTGAAAACGGGACAATGCAAGTTTGGTGCGACTTGTAAATTCCATCATCCGGTTCCTGCTGGTGTCCAAATTCCAGCACCATCACCAGTTGCTCCAGTTTCACCTTTGCCTGTACCAGTGCCTTCACCGTTATATTCAACCATGCAGCCGCCACCTGGTCCTTCATCACAGCAAATTGGTGTGCTGGTTGCAAGGCCTCCTCTGCTGCCTGGCTCATTCGTCCAGAGTCCCTATGGACCTGTGGTACTGTCACCTGCCATGATACCTATTTCTGGCTGGGGTCCTTATCAAGCTTCTGGAACAGGTGCTGTACTTCCTTCCGGTACTCCTAATGTTGGTTCAGCACAGCTTTACGGGATGACACAACTGCCTTCATCAGCAGCTGCCTATCCTGGACCTTATCAACTTCCTGGTTCCTTAGTTGGTCCTTCAAGCAGTAATCAGAAGGAGCAGGCATTTCCAGAAAGGTCTAATCAACAAGATTATCAATATTATCCGAAAACAGGGGAGGTTAAAGTTGGTCCATCCTATAGGCATCACCCTCCACCAGAAATGACTGCACCAAAAGCAAATGTGACTCTTAGTCCTGGTGGTCTTCCTTTGCGCCCGGTAATGGTTGCCTCTCAACTTTGTTATTGTGTGGTGTCTCTTATTGAGCTGTTAATTACATATGCATGGTCATCCCCCGTTTTCCACATAGTCGGAAAAAGCTTTGATTTTATTGCTTCATCATCCCTCTCCAACAAAATTTTGTGTCATATGCACATGCATGGCTTGCAAACTCTGGTTGGAAATAAAAATGCTGATCCCAAACTAGGAATGTCCTGCATACAATCTGAGTTTTCAGAGATCTCCATTCCCCACAGGGGAGAGTATGGGGCGAGAGTGGGCAAGTTTGTTAATGGCTGTATAGGGACTAAAACTGAAGTCTGTGGAAGAATCAAATTAGGGATAAATCAGCCATTGTCTCCTTACATTTTCTCCAGTAGCCAACATCATCAGTCTATTCCATACTTCACGCATGAAAAGAGATTTGCTTATGTTATGTTTTTCGTCTTCTTCTCTTTCGGGTGGGAGGCATATGCCAATAGATCGATTCTTATTCTTTCTTTTCTGACGACTTTGTGCCAAACTAGCCTTCTTCTTCGAGGCCATGGGATGGGAACCTCTGATCAAAAGGAAGAGGCCATTTTTATGCCTCAACCAATGAACTCTTTCTTTCGGGCCGCATTTCCTGATTCTCTCTCCATCAATATAACAGAGAAAGATGAAGCTCAAGGACGTAGTCAGAGATCTTTGGGGGCATCACCTTGTACACATTATGCACAACATGGAGTATGTAAGTTTGGTTCTGCATGCAAATTCGATCATTCTATGGGATCACTGAGTTATAGTCCATCTACTTCTTCCCTGGCTGACATGCCTGTTGCACCCTATCCTGTGGGTTCAACAATTGGTACTCTTGCTCCATCGTCATCGTCATCAGAGTTGCGGCTGGAACTTTCCTCTGGATCCAACAAAGAGTCTATTCCATCCAGAATGTCTTCATCGTCCGGAATGTTGACAGGGTCAATAGGCTTGACTTTGTCAACTGGTGGACCCATTTCTCAATCAAATAGTCAGCCATCTGCTCCAAGTCTGGATCCATTAGCCACTGTCACTAGTACCACCAGTAGCAATGTCTCTCACACCTCAAGCTAA 2205 0.4794 PLIVLFRLPSNQLRSPVRVGAMEQYGRSSEGSRSDPSPEWAGPGAQTGLEEPMWQLGLGAAEESYPQRPDGADCTYYLRTGFCGFGSRCRYNHPRDRGMVVGAERAAGEYPERVGQPVCQYYMRTRTCKFGSSCKYHHPRLAGGAVTPVSLNYYGYPLRPGEKECSYYVKTGQCKFGATCKFHHPVPAGVQIPAPSPVAPVSPLPVPVPSPLYSTMQPPPGPSSQQIGVLVARPPLLPGSFVQSPYGPVVLSPAMIPISGWGPYQASGTGAVLPSGTPNVGSAQLYGMTQLPSSAAAYPGPYQLPGSLVGPSSSNQKEQAFPERSNQQDYQYYPKTGEVKVGPSYRHHPPPEMTAPKANVTLSPGGLPLRPVMVASQLCYCVVSLIELLITYAWSSPVFHIVGKSFDFIASSSLSNKILCHMHMHGLQTLVGNKNADPKLGMSCIQSEFSEISIPHRGEYGARVGKFVNGCIGTKTEVCGRIKLGINQPLSPYIFSSSQHHQSIPYFTHEKRFAYVMFFVFFSFGWEAYANRSILILSFLTTLCQTSLLLRGHGMGTSDQKEEAIFMPQPMNSFFRAAFPDSLSINITEKDEAQGRSQRSLGASPCTHYAQHGVCKFGSACKFDHSMGSLSYSPSTSSLADMPVAPYPVGSTIGTLAPSSSSSELRLELSSGSNKESIPSRMSSSSGMLTGSIGLTLSTGGPISQSNSQPSAPSLDPLATVTSTTSSNVSHTSS 734
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00936 734 ProSiteProfiles Zinc finger C3H1-type profile. 600 628 IPR000571 GO:0046872
Vimu2g00936 734 SUPERFAMILY CCCH zinc finger 604 630 IPR036855 GO:0046872
Vimu2g00936 734 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 604 627 IPR000571 GO:0046872
Vimu2g00936 734 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 161 185 IPR000571 GO:0046872
Vimu2g00936 734 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 116 140 IPR000571 GO:0046872
Vimu2g00936 734 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 72 95 IPR000571 GO:0046872
Vimu2g00936 734 MobiDBLite consensus disorder prediction 656 734 - -
Vimu2g00936 734 SMART c3hfinal6 600 627 IPR000571 GO:0046872
Vimu2g00936 734 SMART c3hfinal6 69 95 IPR000571 GO:0046872
Vimu2g00936 734 SMART c3hfinal6 113 140 IPR000571 GO:0046872
Vimu2g00936 734 SMART c3hfinal6 159 186 IPR000571 GO:0046872
Vimu2g00936 734 SUPERFAMILY CCCH zinc finger 116 140 IPR036855 GO:0046872
Vimu2g00936 734 ProSiteProfiles Zinc finger C3H1-type profile. 113 141 IPR000571 GO:0046872
Vimu2g00936 734 ProSiteProfiles Zinc finger C3H1-type profile. 68 96 IPR000571 GO:0046872
Vimu2g00936 734 Gene3D - 67 144 - -
Vimu2g00936 734 MobiDBLite consensus disorder prediction 23 46 - -
Vimu2g00936 734 SUPERFAMILY CCCH zinc finger 161 186 IPR036855 GO:0046872
Vimu2g00936 734 PANTHER PROTEIN PHOSPHATASE RELATED 602 662 - -
Vimu2g00936 734 SUPERFAMILY CCCH zinc finger 72 96 IPR036855 GO:0046872
Vimu2g00936 734 Gene3D - 145 192 - -
Vimu2g00936 734 ProSiteProfiles Zinc finger C3H1-type profile. 159 187 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g00936 Vimu-Chr2 5881398 5892773 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g00936 602 696 C2H2 Transcription Factor Family AT5G18550 58.763 2.55e-15 77.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vimu2g00936 zf-CCCH 2.9e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g00936 - - gmx:100812433 619.772
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g00936 2 5881398 5892773 Vimu2g00936 2 5881398 5892773 ECH
Vimu7g01837 7 16738127 16742174 Vimu2g00936 2 5881398 5892773 PCT