Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00935 AGAGAGAGAGAGTGTGTGATCTTCGTTTGTTGTCTTCTCTCAGAAATGGTTACGTTCAGGTTTCATCAGTACCAGGTCGTTGGGAGGGCTCTCCCAACGGAAGCAGATCAGCACCCTAAGATTTACCGCATGAAGCTCTGGGCTACCAACGAGGTTCGCGCAAAATCTAAGTTCTGGTATTTTTTGAGGAAGCTGAAGAAGGTGAAGAAGAGCAATGGTCAAATGCTCGCTATCAATGAAATTTTTGAGAAGAACCCCACAAAAATTAAGAACTATGGGATATGGTTGAGGTACCAGAGTAGGACCGGTTACCACAACATGTATAAGGAGTACCGTGATACCACTCTAAATGGTGCAGTGGAGCAGATGTACAATGAGATGGCTTCTCGTCACAGGGTCAGGTGCCCTTGCATCCAAATCATTAAGACTGCCACCATCCCAGCCAAACTTTGCAAGAGGGAGAGCACCAAACAATTCCACAACTCCAAAATCAAGTTCCCATTGGTCTTCAAGAAAGTTAGGCCACCATCTAGGAAGCTGAAGACCACATACAAGGCCAAGAAGCCCAACTTATTTATGTAA 582 0.4519 RERECVIFVCCLLSEMVTFRFHQYQVVGRALPTEADQHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYNEMASRHRVRCPCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPSRKLKTTYKAKKPNLFM 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00935 193 Pfam Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A 22 143 IPR023573 GO:0003735|GO:0005840|GO:0006412
Vimu2g00935 193 SUPERFAMILY RplX-like 86 161 - -
Vimu2g00935 193 Hamap 50S ribosomal protein L18Ae [rpl18a]. 21 84 IPR028877 -
Vimu2g00935 193 FunFam 60S ribosomal protein L18a 87 162 - -
Vimu2g00935 193 Gene3D - 86 159 - -
Vimu2g00935 193 FunFam 60S ribosomal protein L18a 16 86 - -
Vimu2g00935 193 PIRSF Ribosomal_L18a 16 193 IPR021138 GO:0003735|GO:0005840|GO:0006412
Vimu2g00935 193 Gene3D - 12 85 - -
Vimu2g00935 193 PANTHER 60S RIBOSOMAL PROTEIN L18A 17 192 IPR028877 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g00935 Vimu-Chr2 5873941 5875693 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g00935 15 193 Cytoplasmic Ribosomal Protein Gene Family AT2G34480 92.179 6.21e-124 347
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g00935 K02882 - jre:108990266 364.385
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g00935 2 5873941 5875693 Vimu2g00935 2 5873941 5875693 ECH