Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00928 ATGTCGCTTTCCTGTGCCAAAACCTTCTTCCAGAGGTTCTGGCTAGATGAATACCAAATGGGAAATATTCCCCATGGAAGCTTTTTGGCCAATGATGATCTCCTGCCATCCCTTGGAGCCAGAATTAACCAGGAAATTAGACTTAGAAGATACGTAATCTCCCCTTTCAATCCTCGCTATAGGGCATGGGAGTTGGTACTGGTTGTTTTAGTCATATACTCAGCTTGGATTTGCCCATTTGAGTTTGCCTTTCTGCCTTACAAGGAAAATGCTCTATTCATCATAGACAACATTGTCAATGGTTTCTTTGCCATTGACATAGTGTTGACATTCTTTGTTGGATACCTTGACCACCATTCTTATCTTCTTGTGGATGATCCGAAGAGGATTGCAATCAGGTACCTATCTTCCTGGTTTGCTTTTGATGTCTGCTCAACAATACCGTTTCAGTCCTTCAGCTTCCTCTTCACGAATAGTGGCAGTGAACTTGGCTTCAAAGTTTTTAACATGTTTCGGTTATGGCGTTTGAGACGAGTCAGTTCTCTGTTTGCAAGGCTTGAAAAGGACATTCGCTTCAATTATTTCTGGACCAGGTGCACAAAGCTCATTGCTGTGACCTTGTTTGCTGTGCACTGTGCGGGATGCTTTAACTATCTCATTGCAGATAGGTACCCAGATTCCAAAAGAACCTGGATTGGTGCCGTGTACCCAAATTTCAAAGAAGAAAGTCTTTGGGACAGATATGTCACAGCAATATACTGGTCCATTGTCACTCTTACAACCACTGGTTATGGGGATTTACATGCTGAGAACACAAGAGAGATGCTGTTTGATATCGCTTACATGCTGTTCAACTTGGGTTTAACATCCTATATCATTGGAAACATGACTAACATTGTAGTCCACTGGACCAGCCGTACCAGAAATTTTAGAGACACAGTCAAAGCAGCTTCTGAATTTGCATCAAGAAATCATTTGCCCCATCGCATACAAGATCAGATGTTATCCCATATATGTTTGAGGTTTAAAACCGAAGGACTGAAGCAGCAAGAAACATTGAATGATCTTCCAAAGGCAATTCGTTCAAGCATTGCACACCATCTGTTTTTTCCTGTCGTGCAAAAGGTCTACCTTTTCCAAGGAGTCTCACATGATTTCCTTTTCCAACTGATTTCAGATATGGAAGCTGAATATTTCCCACCCAAGGAAGATGTCATACTACAAAACGAGTCCTCCACGGAACTTTATGTGCTGGTTTCAGGGGCAGTGGATCTGGTTCGCTACATCGATGGGCATGATCATGTTCATGGGAAGGCAGTTGCAGTTGATGCGTTTGGAGAGATTGGAGTTTTGTATCAGATACCCCAGCCTTTTACAGTTCGTACAACAGAACTTTCTCAGATTTTAAGACTCAACAAAACATCCTTAATGAATGTTTTACAAGCAAATCCAGGAGACGCACAGATTATAATGGATAACCTTTTAATGAGGTTGAAGGGGCGTGAAGATTTTGGCTTTGAATTTCTATGCACAGATTCTGGGCGGTTTCCAAATGAACTGCTTCAAGGAGATCACACGATACGAAGCTCTTCTCACGAGTGTACAAATAATTCAAATGAGCATTCATTAATGCGTGAAGGAGAGTGCACAGATATTAGAAAGTCTGAGATCAGTTTGCGTAATGTGACTAACGATGATGATTTAGTCACTAAACATAGTGTGATCCCCGAGCATGAAACAAGAGAAGCTCGTGCCCCTGCACGCAAAGGGAATCTAGATGTTGTTGAAATTCTGCTGGAAAGAGAATCAAATCCTAACGCAAATTCCATAGGGTGGACACAAAATGCTCTAGCAAAACAGCCCAAAAACAAGAGCATTTGTGACCCAAAAAGGAGTCACGAAAAGGAGAAGTTGGATGAATTTAGAATAGAGATAGAGGAGCCAGAAATCCTCCTTGACAGGGATAGCTCAACGAGAAACAGAAGACATGGTGGGATTAGATCTATCAAGTATCCAAAAGAAAAAATAAGCACAAACTCCAATTCAAATGATATCAAATCGGCAAGGCTTCCCAAGAAGAGAGTAACAATCCAGTTGCTAGATGGATGCAGGAGTAGCTCACAGGGAAGCCACGGAAAATTAATAATCCTGCCCGATTCGTTAGAAGAACTGCTCAAAATTGCAGGCGAAAAATTTGGCGGCTCGAACCCTACGAAAGTAGTAAATACAGAGAATGCAGAGATAGATGACATAAATGTAATCCGAGATGGAGATCGTCTCTTTCTTCTTTGCTGCGATAACGAAAATTTGTGTTCGTGA 2319 0.4161 MSLSCAKTFFQRFWLDEYQMGNIPHGSFLANDDLLPSLGARINQEIRLRRYVISPFNPRYRAWELVLVVLVIYSAWICPFEFAFLPYKENALFIIDNIVNGFFAIDIVLTFFVGYLDHHSYLLVDDPKRIAIRYLSSWFAFDVCSTIPFQSFSFLFTNSGSELGFKVFNMFRLWRLRRVSSLFARLEKDIRFNYFWTRCTKLIAVTLFAVHCAGCFNYLIADRYPDSKRTWIGAVYPNFKEESLWDRYVTAIYWSIVTLTTTGYGDLHAENTREMLFDIAYMLFNLGLTSYIIGNMTNIVVHWTSRTRNFRDTVKAASEFASRNHLPHRIQDQMLSHICLRFKTEGLKQQETLNDLPKAIRSSIAHHLFFPVVQKVYLFQGVSHDFLFQLISDMEAEYFPPKEDVILQNESSTELYVLVSGAVDLVRYIDGHDHVHGKAVAVDAFGEIGVLYQIPQPFTVRTTELSQILRLNKTSLMNVLQANPGDAQIIMDNLLMRLKGREDFGFEFLCTDSGRFPNELLQGDHTIRSSSHECTNNSNEHSLMREGECTDIRKSEISLRNVTNDDDLVTKHSVIPEHETREARAPARKGNLDVVEILLERESNPNANSIGWTQNALAKQPKNKSICDPKRSHEKEKLDEFRIEIEEPEILLDRDSSTRNRRHGGIRSIKYPKEKISTNSNSNDIKSARLPKKRVTIQLLDGCRSSSQGSHGKLIILPDSLEELLKIAGEKFGGSNPTKVVNTENAEIDDINVIRDGDRLFLLCCDNENLCS 772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00928 772 Pfam KHA, dimerisation domain of potassium ion channel 693 762 IPR021789 -
Vimu2g00928 772 ProSiteProfiles cAMP/cGMP binding motif profile. 378 497 IPR000595 -
Vimu2g00928 772 CDD CAP_ED 378 491 IPR000595 -
Vimu2g00928 772 Gene3D Jelly Rolls 371 504 IPR014710 -
Vimu2g00928 772 FunFam Potassium channel KAT2 366 502 - -
Vimu2g00928 772 Pfam Ion transport protein 61 307 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vimu2g00928 772 Gene3D Helix hairpin bin 302 368 - -
Vimu2g00928 772 ProSiteProfiles KHA domain profile. 694 772 IPR021789 -
Vimu2g00928 772 PRINTS EAG/ELK/ERG potassium channel family signature 248 265 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vimu2g00928 772 PRINTS EAG/ELK/ERG potassium channel family signature 73 80 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vimu2g00928 772 PRINTS EAG/ELK/ERG potassium channel family signature 292 301 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vimu2g00928 772 PRINTS EAG/ELK/ERG potassium channel family signature 96 106 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vimu2g00928 772 PRINTS EAG/ELK/ERG potassium channel family signature 274 285 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vimu2g00928 772 PANTHER POTASSIUM CHANNEL AKT1 27 499 IPR045319 GO:0005249|GO:0006813
Vimu2g00928 772 SMART cnmp_10 378 495 IPR000595 -
Vimu2g00928 772 Pfam Cyclic nucleotide-binding domain 398 482 IPR000595 -
Vimu2g00928 772 SUPERFAMILY cAMP-binding domain-like 305 498 IPR018490 -
Vimu2g00928 772 Gene3D - 61 301 - -
Vimu2g00928 772 SUPERFAMILY Voltage-gated potassium channels 55 300 - -
Vimu2g00928 772 FunFam Potassium channel KAT3 62 302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g00928 Vimu-Chr2 5789670 5793354 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g00928 1 762 Ion Channels AT5G46240 58.793 0.0 879
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g00928 K21867 - gmx:100811356 1336.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g00928 2 5789670 5793354 Vimu2g00928 2 5789670 5793354 ECH