Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00922 ATGTTAATTCAGACTACCTGTGCTCGGGATTCTGATATGAGTTCAGAGACTGTCAATTCCACGCAACGAACTTCCATGAGCAACGAGAGCGTTTGCAGCACCAGCTTCAGCCGCCTCTCCTTCGACCTCCCTCCTTCCTCTTCATCGCCCGAGAGCCTCTTCGTCAAGCCCCACCGCTCCTCCGACTTCGCTTACTCTGCCATCTTCCGCCGCCAGTCCGCCCTCACCTTCCGCGACTTCCACCTCCTCCGCCGCATCGGCGCCGGCGACATCGGCACCGTGTACCTCTGCCGCCTTCGCCACGACGAGGACGATTGCTTCTACGCGATGAAGGTGGTGGACAAGGAGGCCGTGGCGCTGAAGAAGAAGGCGCAGAGAGCGGAGATGGAGAGAAAGATTCTGAAGATGGTTGACCACCCCTTCCTCCCTACGCTCTACGCGGAGTTCGAGGCCTCGCATTTCTCTTGCATTGTGATGGAGTATTGCTCCGGTGGAGACTTGCACTCCCTTCGACACAACCATCCTAACAAACGCTTCTCTCTCTCCTCTGCCAGGTTTTACGCGGCTGAAGTACTGGTGGCGTTGGAGTATCTCCACATGCTGGGAATAATCTACAGGGATCTAAAGCCAGAAAACGTGTTGGTCAGATCAGACGGTCACATCATGCTTTCTGATTTCGATCTCTCTCTCTGCTCCCATGCAATCCCCGCCGTTGAATCCCCTGACTCTTCTCTAGATCCTGCGTTCACACGCACCTTACCCTACACCCGTCAGTACTCCACTCCCTTCTCCTGCCTCTCCAACCGCGTCTTCCGCTCCAAGAAGCTCCAACCCAACCGCCTCTTTGTGGCCGAACCGGTTGGGGCTCGCTCCTGCTCCTTCGTGGGGACACACGAGTACGTCTCACCGGAAGTGGCCTCCGGAAACTCCCACGGCAACGCCGTCGACTGGTGGTCCTTCGGAATATTCATCTTCGAGATGGTGTACGGTCGCACCCCCTTCGCGGGCCCATCGAACGAGGCTACGCTGCGGAACATCATAAAAAACCCCCTCGCCTTTCCCATCGCCACGCCCTCCACCACACTTGAAATGCATGCGCGGGACCTCATCTCCGGGTTGCTCAACAAGGACCCGAACCGCAGGCTTGGGTCGAAGCGCGGCGCCGCCGACGTCAAGAAGCACCCTTTCTTCGCGGGGCTCAATCTGGCACTCATACGAATGGTGACGCCGCCGGAGGTTCCCTCCTCCCTCAGAAGACAGAAAACGACGCTGTTTTACCCCGCTAACGATAACGGCAACGTAAATAACAGTAGACAGGAGCTAACGGCGTTTGATTACTTTTGA 1344 0.5707 MLIQTTCARDSDMSSETVNSTQRTSMSNESVCSTSFSRLSFDLPPSSSSPESLFVKPHRSSDFAYSAIFRRQSALTFRDFHLLRRIGAGDIGTVYLCRLRHDEDDCFYAMKVVDKEAVALKKKAQRAEMERKILKMVDHPFLPTLYAEFEASHFSCIVMEYCSGGDLHSLRHNHPNKRFSLSSARFYAAEVLVALEYLHMLGIIYRDLKPENVLVRSDGHIMLSDFDLSLCSHAIPAVESPDSSLDPAFTRTLPYTRQYSTPFSCLSNRVFRSKKLQPNRLFVAEPVGARSCSFVGTHEYVSPEVASGNSHGNAVDWWSFGIFIFEMVYGRTPFAGPSNEATLRNIIKNPLAFPIATPSTTLEMHARDLISGLLNKDPNRRLGSKRGAADVKKHPFFAGLNLALIRMVTPPEVPSSLRRQKTTLFYPANDNGNVNNSRQELTAFDYF 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00922 447 CDD STKc_phototropin_like 78 414 - -
Vimu2g00922 447 Gene3D Transferase(Phosphotransferase) domain 1 162 230 - -
Vimu2g00922 447 ProSiteProfiles Protein kinase domain profile. 80 397 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g00922 447 SMART serkin_6 80 397 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g00922 447 FunFam protein kinase PINOID 2 78 161 - -
Vimu2g00922 447 MobiDBLite consensus disorder prediction 1 26 - -
Vimu2g00922 447 Gene3D Phosphorylase Kinase; domain 1 78 161 - -
Vimu2g00922 447 SUPERFAMILY Protein kinase-like (PK-like) 60 418 IPR011009 -
Vimu2g00922 447 PANTHER FLIPPASE KINASE 1-RELATED 17 417 - -
Vimu2g00922 447 FunFam protein kinase PINOID 162 230 - -
Vimu2g00922 447 Pfam Protein kinase domain 80 397 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g00922 447 FunFam serine/threonine-protein kinase D6PK-like 289 415 - -
Vimu2g00922 447 ProSitePatterns Serine/Threonine protein kinases active-site signature. 203 215 IPR008271 GO:0004672|GO:0006468
Vimu2g00922 447 Gene3D Transferase(Phosphotransferase) domain 1 290 415 - -
Vimu2g00922 447 Coils Coil 110 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g00922 Vimu-Chr2 5763241 5765511 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g00922 10 447 AGC Kinase Gene Family AT2G34650 66.219 0.0 580
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Vimu2g00922 Pkinase 1.2e-56 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g00922 - - gmx:100795536 761.14