Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00920 ATGGAACTCCAGGTTCACAGATCTGTGAGGTGTGGGAACGACAACCTCAAGCCTTGTTTTATTTTCTCTTTCTATTCTCCTGACATCAACACCTTCCGCAAAACCCGATCCAACAATGTTCAAAGAAAAAGCTATAAACAAGCAAATACAAGGCGAAGCCAAAAGGAGTTTGGTGCAGATCCGCGACCCATTTGCAAAATTTGCTGCTTTAGCTTAAAAACAAAGCGCGAAGACTTGGATCAAAGGCTTATACCTTTTAAAGTGCTGAGTGTTAAGCAACATGGTCAGACTCAGATCCTATCTGCTGAGGTGAGGCTGTGGCTCTGCGACCTACTCAGTCTTTTGCTTTTGAAAGGGTTTCTTTTCCTTCTGCGATTGGGAAAAGCTTTATCAAGGGCTTCTGACTTGGACCGCGATTTATCGTACTTTCCGTTGGATAAGAGAACAAGAAGAAGACCAAGTGGGGTGTGTAGCTTGGAAAAAAGCCGTGTCTGTGATATGGAAGAGGATGAGATTCAAGCACAGGCAGTGTGTAAGTTCCCTAGAGTTGGAAATGGACGGAGCGACCAATACCAAGAGGAAGAAGAAGAGGTTGACATAAGAAGAAGAGGTATTGGTGGCGGCGGTGGAGGCGGCGGTGGAGGAGGAAGTGATGCCAGCACAAACCATTTCCAAAGCAGCTGGCACCACTCTTCGAGAATCATTAGGGTGTCTCGAGCATCTGGTGGCAAAGACAGGCACAGCAAGGTGATGACCTCAAAGGGGTTAAGAGACAGAAGGGTTAGGCTCTCGGTGACCACAGCCATTCAGTTCTACGACCTTCAAGATCGCTTGGGTTATGACCAGCCCAGTAAGGCTGTGGAGTGGTTAATCAATGCTGCTTCAGATGCTATCTCAGAGCTTCCTTCTCTCAACAACCCCTTCCCTGATACCCCTAAGCAGCCAAGTGACGAGAAAAGGCCAACCAGTGGTCAACGTGGGGTTCAACCACAGGCCTTTGATGATGCAGATGGGGACACCAATTTCCTCCACCAGAGCCAAAACCAAAGCCAGAACCTCTCTCTCTCCAAGTCTGCTTGCAGCAGCACTTCCGAGACAAGCAAGGGTTCGGGCTTGTCCCTCTCTAGGTCTGAGATCCGAGTGAACCGTGTGAAGGCAAGGGAGAGGGCAAGGGTAAGAACTGCAAAAGATAAGGGAAAAGATAGGGACAAGGAGAAGGAGAAAGAGAAAGAAAACGAGTCTGGCATTGCACACCACCACCACCACCAACACCACAATGTAAACAACCCCAACCATATGTCTCACACTGCTTCCTTCACCGAGCTTCTCACCGGTGGGATTGGGAGCACAGTAACGGTTAACCCAACGACCACAGCAAGTCCTAATGGATCATCTGTTCATCAGATCCATGAAGGTCATGACGAGGCCAATATATTCAACAAGGGAAGACAACAACAACAACAACATTGGTCTTCGACAGTGACACCCATGGACTACTTCAGCCAAGGAGGCCTCTTGGTGGGACCTTCATCATCATCTGCAAGAACTCAACACCAACACCAACACCAATCTTCTTCAGGACAGTTCCAATTGGGACACGTTCCCATCTCACCATTCAGTGGAGAAAACCACTCGGATCAGATGCAGCATTTTTCGTTCATGCCAGACCACCTTAACATGCCGGCCGTGGTGACTTCTTCTTCTTCTGCTTCTCAGCCCAGCGGGGGTGACAATTACAACCTCAACTTCAGCATCTCTTCGGGCCTTGCTGGTTTCAATAGGGGGACCCTTCAGTCCAATTCTCCGTCCTTTTTGCCTCACCTCCAGAGGTTTCAACCTTTAGACGGATCATCCAATCTACCTTTCTTCATCGGAGCTCCCGCTCCTTCTTCTGCTCCTCCAACCATTGACAGCAACAATAATAACAACCACCACCACCTTCAGTTCTCTCCCGTATTCGATGGCCGCTTGCAACTTTGCTATGGCGATGGAACAAGGCATTCTGACCACAAGGGCAAGGGAAAGAACTAA 2031 0.487 MELQVHRSVRCGNDNLKPCFIFSFYSPDINTFRKTRSNNVQRKSYKQANTRRSQKEFGADPRPICKICCFSLKTKREDLDQRLIPFKVLSVKQHGQTQILSAEVRLWLCDLLSLLLLKGFLFLLRLGKALSRASDLDRDLSYFPLDKRTRRRPSGVCSLEKSRVCDMEEDEIQAQAVCKFPRVGNGRSDQYQEEEEEVDIRRRGIGGGGGGGGGGGSDASTNHFQSSWHHSSRIIRVSRASGGKDRHSKVMTSKGLRDRRVRLSVTTAIQFYDLQDRLGYDQPSKAVEWLINAASDAISELPSLNNPFPDTPKQPSDEKRPTSGQRGVQPQAFDDADGDTNFLHQSQNQSQNLSLSKSACSSTSETSKGSGLSLSRSEIRVNRVKARERARVRTAKDKGKDRDKEKEKEKENESGIAHHHHHQHHNVNNPNHMSHTASFTELLTGGIGSTVTVNPTTTASPNGSSVHQIHEGHDEANIFNKGRQQQQQHWSSTVTPMDYFSQGGLLVGPSSSSARTQHQHQHQSSSGQFQLGHVPISPFSGENHSDQMQHFSFMPDHLNMPAVVTSSSSASQPSGGDNYNLNFSISSGLAGFNRGTLQSNSPSFLPHLQRFQPLDGSSNLPFFIGAPAPSSAPPTIDSNNNNNHHHLQFSPVFDGRLQLCYGDGTRHSDHKGKGKN 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00920 676 ProSiteProfiles TCP domain profile. 243 301 IPR017887 -
Vimu2g00920 676 MobiDBLite consensus disorder prediction 380 418 - -
Vimu2g00920 676 MobiDBLite consensus disorder prediction 300 430 - -
Vimu2g00920 676 Pfam TCP family transcription factor 242 398 IPR017887 -
Vimu2g00920 676 MobiDBLite consensus disorder prediction 188 203 - -
Vimu2g00920 676 MobiDBLite consensus disorder prediction 501 531 - -
Vimu2g00920 676 MobiDBLite consensus disorder prediction 188 231 - -
Vimu2g00920 676 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 206 535 IPR005333 GO:0003700
Vimu2g00920 676 MobiDBLite consensus disorder prediction 340 377 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g00920 Vimu-Chr2 5710282 5712871 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g00920 226 676 TCP Transcription Factor Family AT4G18390 42.116 6.74e-72 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Vimu2g00920 TCP 1.1e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g00920 - - gmx:100787772 723.005