Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00891 ATGTCGCTTTCCTGTGCAAAAAACTTCTTCCAGAGGTTCTGGCTAGATGAATACCAAATGGGTAATATTCCCCATAGAAGCTTTTTGGCCAATGATGATCTCCTGCCATCTCTTGGAGCCAGAATTAACCAAGAAATTAGACTTAGAAGATACGTAATCTCCCCTTTCAATCCTCGCTATAGGGCTTGGGAGTTGGTACTGGTTGTTCTAGTTATATACTCAGCTTGGATTTGCCCATTTGAGTTTGCCTTTCTGCCTTACAAGGAAGACGCTCTATTCATCATAGACAACATTGTCAATGGTTTCTTTGCAATTGACATAGTGTTGACATTCTTTGTTGCATACCTTGACCACCATTCTTATCTTCTTGTGGATGATCCGAAGAGGATTGCAATCAGGTACCTATCTTCCTGGTTTGCTTTTGATGTCTGCTCAACAATACCCTTTCAGTCCTTCAGCTTCCTCTTCACGAATAGTGGCAGTGAGCTTGGCTTCAAAGTTTTTAACATGTTTCGGTTATGGCGTTTGAGACGAGTCAGTTGTCTGTTTGCAAGGCTTGAAAAGGACATTCGCTTCAATTATTTCTGGATTAGGTGCACAAAGCTCATTGCTGTGACCTTGTTTGCTGTGCACTGTGCGGGATGCTTTAACTATCTCATTGCAGATAGGTACCCAGATTCCAAAAGAACCTGGATTGGTGCTGTGTACCCAAATTTCAAAGAAGAAAGTCTTTGGGACAGATATGTCACAGCAATATACTGGTCCATTGTCACTCTTACTACCACTGGTTATGGGGATTTACATGCTGAGAACACAAGAGAGATGCTGTTTGATATCGCTTACATGCTGTTCAACTTGGGTTTAACATCCTATATCATTGGAAACATGACTAACCTTGTAGTCCACTGGACCAGCCGTACCAGAAATTTTGTATGTACTCTCTCAAACTCCTGTTGTTTCCTTCTGAGAGACACAGTCAAAGCAGTTTCTGAATTTGCATCAAGAAATAATTTGCCCCATCGCATACAGGATCAGATGTTATCACATATATGTTTGAGGTTTAAAACCGAAGGACTGAAGCAGCAAGAAACATTGAATGATCTTCCAAAGGCAATTCGTTCAAGCATTGCACACCATCTGTTTTTTCCTGTCGTGCAAAAGGTCTACCTTTTCCAAGGAGTCTCACATGATTTCCTTTTCGAACTGATTTCAGATATGGAAGCTGAATATTTCCCACCCAAGGAAGATGTCATACTACAAAACGAGTCCTCCACGGAACTTTATGTGCTGGTTTCAGGGGCAGTGGATCTGGTTCGCTACATCGATGGGCATGATCATGTTCATGGGAAGGCAGTTGCAGTTGATGCGTTTGGAGAGATTGGAGTTTTATATCAGATACCCCAGCCTTTTACAGTTCGAACAACAGAACTTTCTCAGATTTTAAGAGTCAACAAAACATCCTTAATGAATGTTTTACAAGCAAATCCAAGAGACGCACAGATTATAATGGATAACCTTTTAATGAGGTTGAAGGGGCGTGAAGATTTTGGCTTTGAATTTCTATGCACAGATTCTGGGCGGTTTCCAAATGAACTGCTTCAAGGAGATCATACGATACGAAGCTCTTCTCACGAGTGTACAAATAATTCACATGAGCATTCATTAATGCGTGAAGGAGAGTGCACAGATATTAGAAAGTCTGAGATCAGTTTGCGTAATGTGACTAACGATGATGATTTAGTCACTAAACATAGTGTGATCCCCGAGCATGAAACAAGAGAAGCTCGTGCCCCTGCACGCAAAGGGAATCTAGATGTTGTTGAAATTCTGCTGGAAAGAGAATCAAATCCTAACGCAAATTCCATAGGGTGGACACAAAATGCTCTAGCAAAACAGCCCAAAAACAAGAGCATTTGTGACCCAAAAAGGAGTCATGAAAAGGAGAAGTTGGATGAATTTAGAATAGAGATAGAGGAGCCAGAAATCCTCCTTGACAGGGATAGCTCAACGAGAAACAGAAGACATGGAGGTATTAGATCTATCAAGTATCCAAAAGAAAAAATAACCACATACTCCATTCCAAGAAATTCTAACAGTCCAAGTGATATCGAATCGGCAAGGCTTCCCAAGAAGAGAGTAACAATCCAGTTGCTAGATGGATGTGAAAAATTTGGCGGCTTCAACCCTACAAAAGTAGTAAATACAGAGAATGCAGAGATAGATGACATAAATGTAATCCGAGATGGAGATCGTCTCTTTCTTCTGTGCCTCGATAACGAAAATTTGTGTTCGTGA 2295 0.4096 MSLSCAKNFFQRFWLDEYQMGNIPHRSFLANDDLLPSLGARINQEIRLRRYVISPFNPRYRAWELVLVVLVIYSAWICPFEFAFLPYKEDALFIIDNIVNGFFAIDIVLTFFVAYLDHHSYLLVDDPKRIAIRYLSSWFAFDVCSTIPFQSFSFLFTNSGSELGFKVFNMFRLWRLRRVSCLFARLEKDIRFNYFWIRCTKLIAVTLFAVHCAGCFNYLIADRYPDSKRTWIGAVYPNFKEESLWDRYVTAIYWSIVTLTTTGYGDLHAENTREMLFDIAYMLFNLGLTSYIIGNMTNLVVHWTSRTRNFVCTLSNSCCFLLRDTVKAVSEFASRNNLPHRIQDQMLSHICLRFKTEGLKQQETLNDLPKAIRSSIAHHLFFPVVQKVYLFQGVSHDFLFELISDMEAEYFPPKEDVILQNESSTELYVLVSGAVDLVRYIDGHDHVHGKAVAVDAFGEIGVLYQIPQPFTVRTTELSQILRVNKTSLMNVLQANPRDAQIIMDNLLMRLKGREDFGFEFLCTDSGRFPNELLQGDHTIRSSSHECTNNSHEHSLMREGECTDIRKSEISLRNVTNDDDLVTKHSVIPEHETREARAPARKGNLDVVEILLERESNPNANSIGWTQNALAKQPKNKSICDPKRSHEKEKLDEFRIEIEEPEILLDRDSSTRNRRHGGIRSIKYPKEKITTYSIPRNSNSPSDIESARLPKKRVTIQLLDGCEKFGGFNPTKVVNTENAEIDDINVIRDGDRLFLLCLDNENLCS 764
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00891 764 Pfam Ion transport protein 61 307 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vimu2g00891 764 Gene3D Helix hairpin bin 316 380 - -
Vimu2g00891 764 Pfam KHA, dimerisation domain of potassium ion channel 721 754 IPR021789 -
Vimu2g00891 764 Gene3D Jelly Rolls 383 516 IPR014710 -
Vimu2g00891 764 Gene3D - 61 301 - -
Vimu2g00891 764 PANTHER POTASSIUM CHANNEL AKT1 28 511 IPR045319 GO:0005249|GO:0006813
Vimu2g00891 764 FunFam Potassium channel KAT2 378 514 - -
Vimu2g00891 764 CDD CAP_ED 390 503 IPR000595 -
Vimu2g00891 764 SMART cnmp_10 390 507 IPR000595 -
Vimu2g00891 764 Pfam Cyclic nucleotide-binding domain 410 494 IPR000595 -
Vimu2g00891 764 SUPERFAMILY cAMP-binding domain-like 323 510 IPR018490 -
Vimu2g00891 764 ProSiteProfiles KHA domain profile. 687 764 IPR021789 -
Vimu2g00891 764 SUPERFAMILY Voltage-gated potassium channels 55 300 - -
Vimu2g00891 764 ProSiteProfiles cAMP/cGMP binding motif profile. 390 509 IPR000595 -
Vimu2g00891 764 PRINTS EAG/ELK/ERG potassium channel family signature 274 285 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vimu2g00891 764 PRINTS EAG/ELK/ERG potassium channel family signature 292 301 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vimu2g00891 764 PRINTS EAG/ELK/ERG potassium channel family signature 96 106 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vimu2g00891 764 PRINTS EAG/ELK/ERG potassium channel family signature 107 116 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vimu2g00891 764 PRINTS EAG/ELK/ERG potassium channel family signature 248 265 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vimu2g00891 764 PRINTS EAG/ELK/ERG potassium channel family signature 73 80 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vimu2g00891 764 FunFam Potassium channel KAT3 62 302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g00891 Vimu-Chr2 5527740 5531570 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g00891 1 754 Ion Channels AT5G46240 56.935 0.0 839
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g00891 K21867 - gmx:100811356 1283.09