Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00880 ATGCATGTGCTGGTCCCCTTGTCTCTTTACCAGCAGTTGGTAGCCGCGTGGTATACTTTCCACAAGGTGGCTGTGTCGACCAACAAGGAAGTGGATGCTCATATCCCAAACTACCCAAGCTTGCCTCCTCAACTCATTTGTCAACTTCATAACATGACTATGCATGCTGATGCAGAGACTGACGAAGTGTATGCACAGATGACCTTGCAACCTCTGAATCCTCAAGAGCAAAAGGAGGCATACCTTCCGGCCGAATTGGGCACTCCTAGTAAACAGCCCACAAACTATTTCTGCAAAACTTTGACTGCAAGTGACACAAGCACTCATGGGGGATTCTCTGTACCTCGCCGTGCTGCTGAAAAAGTGTTCCCTGCATTGGATTTTTCTCAGCAGCCTCCTGCTCAAGAATTAATTGCAAGGGATTTGCATGGTAATGAATGGAAATTCAGACATATCTTCCGCGGCCAGCCCAAAAGGCATCTACTTACAACTGGGTGGAGTGTCTTTGTGAGTGCTAAAAGACTTGTTGCTGGTGATTCTGTGCTGTTTATCTGGCAAGCTGTGAATGAAAAGAACCAGCTTCTTCTTGGGATCCGTCGAGCTAGTCGCCCACAAACTGTGATGCCTTCATCAGTGTTGTCAAGTGATAGTATGCACTTGGGGCTTCTTGCTGCAGCAGCTCATGCAGCAGCAACAAATAGTCGTTTCACCATTTTCTATAATCCACGTGCTAGCCCATCAGAATTTGTCATACCCTTAGCAAAGTACGTTAAAGCTGTGTATCATACTCGAGTTTCAGTCGGTATGCGGTTCAGGATGCTGTTTGAAACTGAGGAATCAAGTGTGCGACGATATATGGGTACAATAACTGGCATTAGTGACCTGGATTCTGCCCGGTGGCCAAACTCACACTGGCGCTCAGTTAAGGTTGGCTGGGATGAATCTACTGCTGGAGAGAGACAACCTAGAGTGTCTCTATGGGAAATTGAGCCCTTAACTACGTTTCCTATGTATCCATCTCCATTCCCCCTTAGGCTTAAACGACCATGGCCTCCAGGACTGCCTTCATTCCATGGTATGAAGGATGATGATTTTGGCCTGAATTCATCTCTCTTGTGGCTCCGAGACAGTGATAGGGGGCTTCAGTCTCCTACTTTTCAGGGAATTGGTGTTAATCCTTGGATGCAGCCTAGATTTGATCCCTCCATGTTGAGTATGCAAACAGATATGTATCAAGCTGCTGCTGCTGCTGCTGTTCAGGAGATGAGGGGTTTGGATCCTTCCAAACAGCATTCTGCTTCCATACTTCAATTTCAACAACAGCAGAATTTCCCAAACAGGACAGCTGCTTTTGTGCAGGCCCAGATGTCACAGCAGCCACAACATCAGCAGATTTTTGGAAACAATCAAGAGAATCAACATTCACCACAATCTCAGCTGCAAACTCAGGCTCATCTTCAGCAACATTTACAACATCAGCACTCATTTAATAGTCAGCATCATCATCAGCACCAGCAACAACAACTACGGCAGACACAGCAACAACAACAACAGCAACAAGTAGTAGATAATCAGCAAATTTCTAGTGCAGTTTCTTCAATGTCTCAGTTTGTTTCAGCTCCTCCACCTCAATCACCACCTATGCAAGCTATCGCTTCCTTGTGCCAACAGCAAAATTTTTCTGATTCGAATGGGAACTCTGGGCCTACTATTGTTTCTCCCCTGCACAGTATCTTGGGTTCATTTCCACAGGATGAAACAGCTCACCTACTGAACCTTCCCAGAACAAGCTCTTGGATTCCTGTTCAAAATTCAACTGGATGGCCTTCAAAGCGTGTTGCAGTGGATCCTCTTCTTTCTACTGGAGTGTCTCAGTGTGTTCTACCTCAGGTGGAGCAGCTAGGGCAGCCCCAGAGTTCTGTGTCTCAAAATGCTATTACTTTACCACCTTTTCCTGGTAGGGAGTGCTCCATAGACCAAGAAGGGAGCAATGATCCTCAAAATCATCTCTTATTCGGTGTTAATATAGATTCAACATCCCTTCTCATGCCTAATGGAATGTCAACCCTTAAGGGGGTTAGCAGCAACAATGACTCCTCGACCATGCCATATCAATCTTCTAATTATCTGAATACCGCCACAGGGACTGATTCTTCACTGAATCATGGAATAACGCCCAGTATTGGCGGTGAATCAGGTTACCTGCAGAGTCCAGAAAATGCTGGACAAGGAAACCCACTGAACAAAACCTTTGTGAAGGTTTATAAGTCAGGGTCCTTTGGAAGGTCACTGGATATCACTAAATTCAGCAGCTACCATGAGCTGCGAAGTGAACTTGCTCAAATGTTTGGCCTTGAAGGCGAGTTGGAGGACCCTGTGAGATCAGGCTGGCAGCTTGTATTTGTAGACCGAGAGAACGATGTTCTTCTCCTTGGTGATGGCCCTTGGCCGGAATTCGTAAATAGTGTATGGTGCATAAAGATACTCTCTCCTCAGGAAGTGCAGCAAATGGGGAACTCCGGCCTTGAGCTCTTGAACTCGGTTCCAATTCAAAGGCTCTCTAATGGCATCTGTGATGACTACGTGAGCCGTCAAGACCCAAGAAATTTAAGCACTGGAATAACAGCTGTGGGGTCTTTAGACTACTGA 2649 0.4609 MHVLVPLSLYQQLVAAWYTFHKVAVSTNKEVDAHIPNYPSLPPQLICQLHNMTMHADAETDEVYAQMTLQPLNPQEQKEAYLPAELGTPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPALDFSQQPPAQELIARDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWQAVNEKNQLLLGIRRASRPQTVMPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDSARWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPPGLPSFHGMKDDDFGLNSSLLWLRDSDRGLQSPTFQGIGVNPWMQPRFDPSMLSMQTDMYQAAAAAAVQEMRGLDPSKQHSASILQFQQQQNFPNRTAAFVQAQMSQQPQHQQIFGNNQENQHSPQSQLQTQAHLQQHLQHQHSFNSQHHHQHQQQQLRQTQQQQQQQQVVDNQQISSAVSSMSQFVSAPPPQSPPMQAIASLCQQQNFSDSNGNSGPTIVSPLHSILGSFPQDETAHLLNLPRTSSWIPVQNSTGWPSKRVAVDPLLSTGVSQCVLPQVEQLGQPQSSVSQNAITLPPFPGRECSIDQEGSNDPQNHLLFGVNIDSTSLLMPNGMSTLKGVSSNNDSSTMPYQSSNYLNTATGTDSSLNHGITPSIGGESGYLQSPENAGQGNPLNKTFVKVYKSGSFGRSLDITKFSSYHELRSELAQMFGLEGELEDPVRSGWQLVFVDRENDVLLLGDGPWPEFVNSVWCIKILSPQEVQQMGNSGLELLNSVPIQRLSNGICDDYVSRQDPRNLSTGITAVGSLDY 882
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00880 882 FunFam Auxin response factor 745 838 - -
Vimu2g00880 882 ProSiteProfiles PB1 domain profile. 749 833 IPR000270 GO:0005515
Vimu2g00880 882 FunFam Auxin response factor 95 202 - -
Vimu2g00880 882 Gene3D - 95 201 IPR015300 -
Vimu2g00880 882 FunFam Auxin response factor 264 336 - -
Vimu2g00880 882 Pfam AUX/IAA family 742 834 IPR033389 -
Vimu2g00880 882 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 22 838 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vimu2g00880 882 MobiDBLite consensus disorder prediction 468 526 - -
Vimu2g00880 882 ProSiteProfiles B3 DNA-binding domain profile. 97 202 IPR003340 GO:0003677
Vimu2g00880 882 Pfam B3 DNA binding domain 97 201 IPR003340 GO:0003677
Vimu2g00880 882 SMART B3_2 97 202 IPR003340 GO:0003677
Vimu2g00880 882 CDD B3_DNA 96 200 IPR003340 GO:0003677
Vimu2g00880 882 MobiDBLite consensus disorder prediction 717 742 - -
Vimu2g00880 882 Gene3D - 746 838 - -
Vimu2g00880 882 SUPERFAMILY DNA-binding pseudobarrel domain 82 229 IPR015300 -
Vimu2g00880 882 Gene3D - 264 336 - -
Vimu2g00880 882 Pfam Auxin response factor 226 309 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vimu2g00880 882 SUPERFAMILY CAD & PB1 domains 748 824 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g00880 Vimu-Chr2 5446373 5451551 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g00880 22 456 B3 DNA Binding Superfamily AT1G30330 84.703 0.0 747
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vimu2g00880 AUX_IAA 2.3e-07 CL0072