Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00878 ATGAGGTGCCCTTCCATTAGTTTTACATTATACAGCACATTTGGTTGCGCCTCTGCTCTCTGCCACCGCTGTGTCTATCGCAACCATGGTGATTCCTCATACCCCATTCTCAATCATTTATCTCTTTTCGTTCCTAAGCAAATTCACGAGATTAAGGACTTTCTTCTCACAGCCAGAAGGAAGGATGCGAGGTCCGTGAAGATTAAGAGGAGCAGAGATGTGGTTAAGTTCAAGGTTAGATGCTCCACGTACCTCTACACACTCTGTGTGTTTGACCCAGAGAAAGCTGATAAATTGAAGCAATCACTTCCTCCAGTATATGATTTGGGGAACTTGCATTTCTTTGAGCAACTATATTTTGAACTGCTTAATTGTTTGAGTGTTCAAGACCTGTAA 396 0.4242 MRCPSISFTLYSTFGCASALCHRCVYRNHGDSSYPILNHLSLFVPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSTYLYTLCVFDPEKADKLKQSLPPVYDLGNLHFFEQLYFELLNCLSVQDL 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00878 131 Gene3D - 44 112 IPR038464 -
Vimu2g00878 131 PANTHER 60S RIBOSOMAL PROTEIN L38 45 106 IPR002675 GO:0003735|GO:0005840|GO:0006412
Vimu2g00878 131 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 16 - -
Vimu2g00878 131 FunFam 60S ribosomal protein L38 44 112 - -
Vimu2g00878 131 Pfam Ribosomal L38e protein family 45 107 IPR002675 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g00878 Vimu-Chr2 5441627 5442660 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g00878 44 112 Cytoplasmic Ribosomal Protein Gene Family AT3G59540 84.058 1.06e-36 118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g00878 K02923 - gmx:100795924 124.02