Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00874 ATGGAAATGCCCATAGACAAAAGGGAAACACCATTAAAAATGGTTAACTTCAGTGCAAGTTACAGTACTTTTAGTTTCATTTGTTACCGCCTTCTACTTCCCCTTCTTCTTTTATCATTATTCTTCTTTCAATTTGCATGGTGTGGCTCCATAGTTAAGTTCCTTCCTGGATTCGAGGGACCCCTTCCTTTTGTCCTTGAAACCGGATATGTGGGAGTGGGTGAATCTGATGATGTGCAGGCATTCTACTATTTCATTGAGTCAGAAAATAATCCAAAGGAGGATCCTCTCATGCTTTGGCTCACTGGTGGCCCTGGTTGCTCAGCCCTCTCTGGCCTTGTCTTAGAAATAGGTCCTCTTGGTTTTAAGTATGAGGAATATGATGGAAGCCTCCCAAATTTGTTCTATAGGCAACACTCATGGACTAAGGTTAGTAGCATTATATTTGTAGACTTGCCAGTTTTCACTGGATTCACTTATGCCACAACAGAGTCTGCTGCTCAACGAAGTGACTGGATGCTTGTTCACCAGGTCCATCAATTTCTAAGGAAGTGGCTGATTGATCATCCAACTTTTTTGTCAAACCATGTTTACATTGGTGGCGATTCCTACTCTGGCATTCCTATTCCAGTGATTGTTCAAGAAATTTCACAAGCAAATGAAAAAGGGGTACAACCATGGATAAATCTCCAGGGATACCTGTTAGGGAATGCTGCTACCACTGGAAGTGAATATAATTATCGAATTCCTTTTTCTCATGGAATGGGACTTATTTCCGATGAACTATATGAGTCACTACAAAAAAATTGCAAAGGAGAGTACACAAAAGTAGACGAAAAAAATGTATTATGTTCTAGAGATATGGAGTCATTCAACAAGAGTTATGTATACTTTCTCTGCGGTTTATGGGCCAATGATGAAAATGTTCGCACTGCATTACATATCCGTCAGGGAAGTATAGGAAAATGGCGTCGTTGTACGTTTGATATACCTCACGAGAAGGATATCCCAAGCAGTTTTGAGTATCATGTAAATCTCAGTAGAATGGGCTATCGTTCGCTCATATACAGTGGCGATCATGACCTTTTGGTTCCTTTCTTGGCAACTCAAGCATGGGTCAAATCTTTAAACTACTCCATTGTGGATGATTGGAGACAATGGTATACAAATGGCCAAGTTGCAGGATACACCAGGACTTACTCCAATCGAATGACATTTGCAACTGTGAAGGCAAGTCTTTTTTGTTCTTCTTGTTGCTCTTGTGGGTCAAATATAGGTGGAGGCCACACAGCTCCAGAGTACAAACCTGAAGAATGCCTTGCCATGTACAGTAGATGGCTATCTAACAGAGCTTTGTAA 1359 0.4084 MEMPIDKRETPLKMVNFSASYSTFSFICYRLLLPLLLLSLFFFQFAWCGSIVKFLPGFEGPLPFVLETGYVGVGESDDVQAFYYFIESENNPKEDPLMLWLTGGPGCSALSGLVLEIGPLGFKYEEYDGSLPNLFYRQHSWTKVSSIIFVDLPVFTGFTYATTESAAQRSDWMLVHQVHQFLRKWLIDHPTFLSNHVYIGGDSYSGIPIPVIVQEISQANEKGVQPWINLQGYLLGNAATTGSEYNYRIPFSHGMGLISDELYESLQKNCKGEYTKVDEKNVLCSRDMESFNKSYVYFLCGLWANDENVRTALHIRQGSIGKWRRCTFDIPHEKDIPSSFEYHVNLSRMGYRSLIYSGDHDLLVPFLATQAWVKSLNYSIVDDWRQWYTNGQVAGYTRTYSNRMTFATVKASLFCSSCCSCGSNIGGGHTAPEYKPEECLAMYSRWLSNRAL 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00874 452 Gene3D alpha/beta hydrolase 49 303 IPR029058 -
Vimu2g00874 452 FunFam Carboxypeptidase 292 451 - -
Vimu2g00874 452 SUPERFAMILY alpha/beta-Hydrolases 52 450 IPR029058 -
Vimu2g00874 452 Pfam Serine carboxypeptidase 303 449 IPR001563 GO:0004185|GO:0006508
Vimu2g00874 452 Pfam Serine carboxypeptidase 56 294 IPR001563 GO:0004185|GO:0006508
Vimu2g00874 452 Gene3D - 304 451 - -
Vimu2g00874 452 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 50 436 IPR001563 GO:0004185|GO:0006508
Vimu2g00874 452 FunFam Serine carboxypeptidase-like 19 46 298 - -
Vimu2g00874 452 PRINTS Carboxypeptidase C serine protease (S10) family signature 185 210 IPR001563 GO:0004185|GO:0006508
Vimu2g00874 452 PRINTS Carboxypeptidase C serine protease (S10) family signature 419 432 IPR001563 GO:0004185|GO:0006508
Vimu2g00874 452 PRINTS Carboxypeptidase C serine protease (S10) family signature 137 149 IPR001563 GO:0004185|GO:0006508
Vimu2g00874 452 PRINTS Carboxypeptidase C serine protease (S10) family signature 150 160 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g00874 Vimu-Chr2 5417675 5421373 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g00874 46 75 Calmodulin-binding Proteins AT2G22960 76.667 1.04e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g00874 K16296 - gmx:100792006 711.835