Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00869 ATGGCACCAGACGAAGAACACAAGGTCAAAGTCCAGGAGAAGGTTCCATTTTACAAGCTATTCATTTTTGCAGATAGCCTTGACAGGACTTTGATGATAATTGGTCTCATCTGTGCCATGGCTAATGGGATGGGGCAGCCTCTCATGACCCTAATTTTTGGGAAGATGATCAATGCCTTTGGCTCCACTGATCCTTCCCACACAGTTAAGGAAGTTTCCAAGGTTGTGTTATTATTTGTTTACCTGGCTTTTGGTGCTGGAATAGCCTCTTTTCTGCAGGTATCATGTTGGATGGTGACAGGAGAAAGACAAGCCGCTAGAATCCGTTGCATGTACTTGAAAACTATATTGAAGCAAGACATTACCTTTTTTGACACTGAAACAAGTGGTGAGGTAATTGGAAGAATGTCAAGTGACACCATTCTCATTGAAGATGCCATGGGAGAAAAGGTTGGGAAGTTTATTCAACTTGTTACATCCTTTTTTGGTGCCTTTATAATTGCCTTCACAAGAGGATGGCAACTCTGTCTAGTTCTGCTTGCATGTATTCCTTGTATTGTTATTGTTGGTGGAATTATATCCGTGATGATGGAGATAATGTCAACACGGGGGCAAGCTGCTTATGCAGAAGCTGGAAGTGTTGCAGAACAAACAGTTGGAGCCATCAGAACAGTTGCCTCTTTCACTGGTGAGAAAAAAGCAATAGAAAAGTATAATAACAAGTTAAGGATAGCTTATATTACAACTGTTGAACAAGGGCTGGCTTCAGGGTTTGGAATGGGGATACTTTTATTGATTATATTTTCCACCTATGCACTTGCCATGTGGTATGGTTCTAAACTCATCATTGAGAAAGGCTATGATGGTGGAACTGTTTTCAATATTATCATATCAATCAATACTGGTGCAATGGCACTTGGTCAGGCAACACCATACGTAAATTCATTTGCAGCCGGTCAAGCAGCAGCATATAAGATGTTTGAAACAATTAAACGAAAGCCAAAAATAGACGCTTATGACACCAATGGTGTTGTCTTAGGAGACATAAAGGGAGATGTTGAACTCAAAGATGTTTACTTCAGATACCCTGCAAGGCCAAATGTTCAGATATTTTCCGGATTCTCATTCTATGTTCCGAGTGGCACAACTGCTGCTTTAGTGGGTCACAGTGGAAGTGGGAAGTCAACTGTAATAAGTTTATTAGAAAGATTTTATGATCCTGAAGCTGGAGAAGTTCTTATAGATGGTGTGAATTTGAAGAATTTTCAAGTTAGATGGATTAGAGAACAGATTGGACTTGTTAGTCAAGAGCCTGTCCTGTTTACAGCTAGTATTAAAGACAACATTGCATACGGGAAAGAAGGTGCAACAGATGAGGAGATAACTAAAGCAATAACTCTTGCCGATGCAAAAAAATTCATTGATAAGCTACCTCAGGGCATTGACACGGTGGTAGGAGGACATGGAACTCAAATTTCCGGTGGGCAAAAGCAAAGAATTGCAATTGCAAGGGCAATTTTGAAGAACCCAAGAATCCTTCTCCTCGATGAAGCTACAAATGCATTAGATGCTGAGTCTGAGCATATTGTTCAAGTAGCACTTGAAAAAGTTATGACCCCAAGGACTACTTTAGTTGTTGCACATCGTTTGACAACTATTAGACACGCTGACATCATAGCAGTGGTACATCAGGGAAAAATCGTGGAGAAAGGAACTCATGATGAGTTAATCAAGGATGCTGATGGTGCTTATTCTCGGCTTGTTCGTCTACAAGAAGGAAATAAAGGAGCAGAAGAAGGGAGCCGTAAGTCAGAAAAGTCAAATAACAATAGTTTCGACCTAACTCGAAGAACATCCTTTGCGAGATCGAGCAGTAGACACTCTCTCTCATTTGGTTTTGCTCTTCCTTACCAAATTCCCTTGCACGAGTCTGGAGTGGAAGATAACGGGGATGTTGAAAGTAGTGAAGTTGATAATAAGAAGCATCAAAAGGTTGCTGTTAACTATTTGGTCAAGTTGAACAAGCCAGAGGTTCCTGTCTTAGTACTAGGATCCATTGCAGCCGCAATACATGGTCTTACTCTCCCTGTATTTGGACTCTTGCTCTCATCAGCTGTTAACACATTTTTTAAACCTAGTGATCAGCTTAGGAAAGATTCTATGTTTTGGTCCTTTCTATTTGTTGGTTTGGGGATTGTCGGTCTGGTGGCTATGACATTGCAAAACTACTTATTTGGGATAGCAGGTGGGAAACTTATAGAACGAATTCGTTCAATGACATTTAATAAGGTTGTGCACCAAGAAATCAGTTGGTTCGATCATCCTTCAAATTCATGTGGTGCAGTTAGTGCTAGGCTAGCTACTGATGCTTCAAGAGTGAGAAGTCTCGTCGGTGACACCTTATCCCTCATTGTGCAAAACATAGCAACAATCACAACAGGTTTAGTTATAGCATTCACTGCTAATTGGATTCTGGCTTTTGTAATTCTGGCTGTGTCACCCTTGTTGCTTCTACAAGGATACCTTCAAACCAAGTTCTTGAAAGGATTCAGTGCAGATGCAAAGGTGAAGTATGAAGAGGCAAGTCAGGTGGCAAATGATGCTATTGGTAGCATTAGAACTGTTGCATCTTTCTGTGCCGAGCCAAAGGTGGTGGATATGTACATGAAGAAATGTTCAGGGCCAAAAAAACAAGGTGTTCGCTTGGGGCTTGTTAGTGGTGCAGGACTGGGTTTCTCTTTTCTTGCTCTATACTGCACAAATGCTTTCTGTTTCTACATAGGATCTATTCTTGTGCAAGACGGGAAAGCAACTTTTGGAGAGGTTTTCAAGGTTTTCTTTGCCTTGACAGTTACTGCAATTGGTGTTTCCCAGAGCTGTGCCTTGGCTCCAAATACTAACAAAGCCAAAGATTCTGCAACTTCAATATTCAAAATTCTTGATACCAAATCAGCGATTGATTCCAGCAGTGATGAGGGCACAACACTAGACCTCATGAAAGGTGATATTGAACTACAACAAACCGTTGCCTTGGTTGGAGAAAGTGGAAGTGGAAAATCAACAGTTATTAACCTCTTACAGAGATTTTACAATCCTGATTCTGGACGTATACTACTTGATGGAGTGGATATAAAAAACTTCAGACTCAGTTGGTTGAGACAACAAATGGTTTTGGTTGGTCAAGAGCCTATTCTTTTCAATGAAAGCATTCGTGTCAACATAGCTTATAGTAAAGAGGGAGGTGCCACAGAGGAAGAAATAGTTGCAGCAGCAGAAGCAGCAAATGCACACAAGTTCATAAGCTCTCTTCCACATAGTTATGACACTCCTGTGGGAGAACGGGGGACACAACTGTCAAGAGGACAAAAGCAACGCATAATCATTGCAAGAGCCATTCTGAAAGATCCAAAAATCCTTTTGCTGGATGAGGCTACCAGTGCACTTGATGCAGAATCTGAGTGTGTGGTTCAAGAGGCTCTTGATAAAGTGAGTGTTAATAGAACTACCGTTATGGTAGCTCACCGTCTTGCAACAATTAAAGATGCTGACATTATAGCAGTAGTAAAAAATGGGGTCATTGCTGAGAAGGGGAGACATGACGCGTTGATGAAGATTGATGATGGAGTTTATGCTTCAATGGTATCTCTCCATATTAGTGCATCATAG 3666 0.41 MAPDEEHKVKVQEKVPFYKLFIFADSLDRTLMIIGLICAMANGMGQPLMTLIFGKMINAFGSTDPSHTVKEVSKVVLLFVYLAFGAGIASFLQVSCWMVTGERQAARIRCMYLKTILKQDITFFDTETSGEVIGRMSSDTILIEDAMGEKVGKFIQLVTSFFGAFIIAFTRGWQLCLVLLACIPCIVIVGGIISVMMEIMSTRGQAAYAEAGSVAEQTVGAIRTVASFTGEKKAIEKYNNKLRIAYITTVEQGLASGFGMGILLLIIFSTYALAMWYGSKLIIEKGYDGGTVFNIIISINTGAMALGQATPYVNSFAAGQAAAYKMFETIKRKPKIDAYDTNGVVLGDIKGDVELKDVYFRYPARPNVQIFSGFSFYVPSGTTAALVGHSGSGKSTVISLLERFYDPEAGEVLIDGVNLKNFQVRWIREQIGLVSQEPVLFTASIKDNIAYGKEGATDEEITKAITLADAKKFIDKLPQGIDTVVGGHGTQISGGQKQRIAIARAILKNPRILLLDEATNALDAESEHIVQVALEKVMTPRTTLVVAHRLTTIRHADIIAVVHQGKIVEKGTHDELIKDADGAYSRLVRLQEGNKGAEEGSRKSEKSNNNSFDLTRRTSFARSSSRHSLSFGFALPYQIPLHESGVEDNGDVESSEVDNKKHQKVAVNYLVKLNKPEVPVLVLGSIAAAIHGLTLPVFGLLLSSAVNTFFKPSDQLRKDSMFWSFLFVGLGIVGLVAMTLQNYLFGIAGGKLIERIRSMTFNKVVHQEISWFDHPSNSCGAVSARLATDASRVRSLVGDTLSLIVQNIATITTGLVIAFTANWILAFVILAVSPLLLLQGYLQTKFLKGFSADAKVKYEEASQVANDAIGSIRTVASFCAEPKVVDMYMKKCSGPKKQGVRLGLVSGAGLGFSFLALYCTNAFCFYIGSILVQDGKATFGEVFKVFFALTVTAIGVSQSCALAPNTNKAKDSATSIFKILDTKSAIDSSSDEGTTLDLMKGDIELQQTVALVGESGSGKSTVINLLQRFYNPDSGRILLDGVDIKNFRLSWLRQQMVLVGQEPILFNESIRVNIAYSKEGGATEEEIVAAAEAANAHKFISSLPHSYDTPVGERGTQLSRGQKQRIIIARAILKDPKILLLDEATSALDAESECVVQEALDKVSVNRTTVMVAHRLATIKDADIIAVVKNGVIAEKGRHDALMKIDDGVYASMVSLHISAS 1221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00869 1221 CDD ABC_MTABC3_MDL1_MDL2 353 591 - -
Vimu2g00869 1221 SMART AAA_5 380 552 IPR003593 GO:0016887
Vimu2g00869 1221 SMART AAA_5 1005 1198 IPR003593 GO:0016887
Vimu2g00869 1221 Pfam ABC transporter 373 520 IPR003439 GO:0005524
Vimu2g00869 1221 MobiDBLite consensus disorder prediction 593 610 - -
Vimu2g00869 1221 SUPERFAMILY ABC transporter transmembrane region 669 983 IPR036640 GO:0005524|GO:0016020
Vimu2g00869 1221 Gene3D ABC transporter type 1, transmembrane domain 19 609 IPR036640 GO:0005524|GO:0016020
Vimu2g00869 1221 MobiDBLite consensus disorder prediction 593 616 - -
Vimu2g00869 1221 CDD ABC_6TM_Pgp_ABCB1_D1_like 32 326 - -
Vimu2g00869 1221 Pfam ABC transporter 999 1146 IPR003439 GO:0005524
Vimu2g00869 1221 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 682 968 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vimu2g00869 1221 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 353 589 IPR003439 GO:0005524
Vimu2g00869 1221 Pfam ABC transporter transmembrane region 682 953 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vimu2g00869 1221 Pfam ABC transporter transmembrane region 32 304 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vimu2g00869 1221 SUPERFAMILY ABC transporter transmembrane region 21 337 IPR036640 GO:0005524|GO:0016020
Vimu2g00869 1221 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 992 1216 IPR027417 -
Vimu2g00869 1221 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 980 1215 IPR003439 GO:0005524
Vimu2g00869 1221 FunFam ABC transporter B family member 1 982 1218 - -
Vimu2g00869 1221 Gene3D - 995 1216 IPR027417 -
Vimu2g00869 1221 CDD ABC_6TM_Pgp_ABCB1_D2_like 672 986 - -
Vimu2g00869 1221 ProSitePatterns ABC transporters family signature. 492 506 IPR017871 GO:0005524|GO:0016887
Vimu2g00869 1221 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 342 591 IPR027417 -
Vimu2g00869 1221 PANTHER ABC TRANSPORTER B FAMILY 4 592 IPR039421 -
Vimu2g00869 1221 FunFam ABC transporter B family member 1 343 592 - -
Vimu2g00869 1221 FunFam ABC transporter B family member 1 661 969 - -
Vimu2g00869 1221 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 33 318 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vimu2g00869 1221 Gene3D ABC transporter type 1, transmembrane domain 651 989 IPR036640 GO:0005524|GO:0016020
Vimu2g00869 1221 FunFam ABC transporter B family member 9 19 345 - -
Vimu2g00869 1221 Gene3D - 343 592 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g00869 Vimu-Chr2 5388972 5394401 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g00869 5 1217 Calmodulin-binding Proteins AT2G36910 42.540 0.0 973
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g00869 K05658 - gmx:100792531 1957.96