Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00860 ATGACAATTAAGAGAGTTAATTCAGCAATTTACTTCTTACTTTTTCTCCACTTTCTCCTTCCCTTCGCCTCATGCAGTAACACGAAGCAGGTTTATGTAGTTGAGTTGTTCGGAGATCACAGCAATAGTGATAAAACAGATGAATTTGAGAATGTCCATAATGCTTTTTTGCTTTCCGTTAAAGAAACTGAGGAGGAAGCACGAGCTTCCCTTCTTTATAGTTACAAACACAGTATCAATGGTTTTGCAGCATTGCTTACTCCAACAGAAGCCAATGAGCTCTCAGAAATGGAGGGAGTGGTTTCTGTGCATAAGAACCAGCCAAGAATCTACTCTTTGCACACCACCAGATCATGGGAATTCGTGGGATTGCATAGCCCTTTGAATCCATGGAAAGAAGACTCAAATAAGAAAAATAGAGACTTGCGAAGCAGAGCACAATATGGGAAAGATATCATAGTAGGAATGATTGATAGTGGTGTGTGGCCAGACTCAAGGAGCTTCAGTGATGAAGGGATGGAGCCTGTTCCAACAAAATGGAAAGGAGAATGCCAAAATGGAACAGCTTTCGATTCATCGCAATGTAATAGGAAGATTATAGGAGCTCGTTACTACTTGCGTGGCTACGAAAGTGCATTTGGTCCTCTAAACGAAAAAGAGGACTACAAATCAGCACGTGATAAAGATGGTCATGGAACACACACAGCTTCAATAGTTGCAGGGCGTGCAGTGGCTAATGCCTCAGCCCTTGGAGGCTTTGCCAAGGGCACAGCCCTAGGTGGGGCCCCTTTGGCCCGTCTTGCCATATACAAAGCATGTTGGGCCATTAAGGGACAGTCCAAAGACCAAGGGAACGTATGCACAAACATTGACATGCTCAAAGCCATAGATGATGCCATTGGTGATGGCGTTGATGTTCTAAGCATTTCCATTGGGTTCAAAGAACCCCTTTCTTATGAGGAGGATGTGATTGCCAGGGGTGCATTGCATGCTGTGAGGAAAAACATTGTCGTAGTGTGCAGTGCAGGTAACTCTGGCCCTTCACCTCAAACTTTGTCAAACCCTGCACCATGGATCATCACTGTTGGTGCCAGCACTGTGGATCGGTCTTTTCTTACTCCTGTTAAGCTCACCAATGGCACAGTCATTGAGGGTCGATCAATTGCCCCAGTTCACATGGGAAACAACTATTACCCATTGGTTCTAGCTAAAGATGTTGAACTTCCAGGCCTGCCTAGAAATAATTCTGGGTATTGCTTGGACAATAGCCTTGAACCTAACAGGACAATGGGGAAGATAGTTATCTGCCTCAGAGGGCAAGGTGGAAGGTTAAAAAAAGGCTTAGAAGTTCAAAGGGCTGGGGGGATTGGTCTTATCCTTGGGAACAATAAACTATATGGAAATGATGTACCCTCTGATCCTCATTTTATTCCCGCCACTGGACTGTCCTATGATAATGTCTTAAAACTCATTCACTATGTACGTTCTACCCCAAATCCAATGGCACAAATTCTGCCAGGAACAACAGTGTTAAAAACCAAGCCAGCACCCTACATGGCCTCTTTCTCTAGCAGGGGTCCAAATATAATTGACCCCAATATTCTCAAGCCTGATATTACAGCCCCAGGAGTAGACATATTAGCAGCATGGACCGCGGAAGATGGCCCCACACGAATGACATTTAACGACAAACGAGTGGTTAAGTACAACATTTTCTCTGGAACTTCAATGTCATGCCCTCATGTTGCTGCAGCAGCTGTTCTTCTCAAAGCCATACACCCTACATGGACCACTGCTGCTATAAGATCTGCCCTCATGACTACAGCCATGCCAACGGACAACACTGGCCATCCATTGATTGATGAAGCTGGAAATCTTGCAACTCCTTTTGCAATGGGATCAGGCCACTTCAACCCCAAAAGAGCAGCACATCCTGGTCTAGTTTATGATGCCTCCTACATGGACTACCTTCTTTACACTTGTAAACTTGGAGTAGCTAAAAACCTCAACATTACATATTGTCCAAAGTCATTTGTTGAACACTTTGAACTCAACTATCCATCCATACAAATCCATGGACTCAATTATTCTAGGACTATTAAGAGGACAGTCACCAATGTTGGTAGAAGAAGGAGTATTTACAAGTTTAGTGCCTCGTCACCAAAGGAATTCTCCATCACAGCCACTCCAGATACTCTTACATTTAATCATGTTGGGCAGAAAATGAACTTCATCATCACAGTGACAGCAAACTTGAGTCAGATACCAACCAACTATGGCCCAGATAAGTACTACTTTGGTTGGTATGCATGGACTCGAAAACATATCGTTGCCAAAGGTCTAAAAGAGTTAGAGAATCTTGGAGAGACAGGAAACAACAGATAA 2385 0.4373 MTIKRVNSAIYFLLFLHFLLPFASCSNTKQVYVVELFGDHSNSDKTDEFENVHNAFLLSVKETEEEARASLLYSYKHSINGFAALLTPTEANELSEMEGVVSVHKNQPRIYSLHTTRSWEFVGLHSPLNPWKEDSNKKNRDLRSRAQYGKDIIVGMIDSGVWPDSRSFSDEGMEPVPTKWKGECQNGTAFDSSQCNRKIIGARYYLRGYESAFGPLNEKEDYKSARDKDGHGTHTASIVAGRAVANASALGGFAKGTALGGAPLARLAIYKACWAIKGQSKDQGNVCTNIDMLKAIDDAIGDGVDVLSISIGFKEPLSYEEDVIARGALHAVRKNIVVVCSAGNSGPSPQTLSNPAPWIITVGASTVDRSFLTPVKLTNGTVIEGRSIAPVHMGNNYYPLVLAKDVELPGLPRNNSGYCLDNSLEPNRTMGKIVICLRGQGGRLKKGLEVQRAGGIGLILGNNKLYGNDVPSDPHFIPATGLSYDNVLKLIHYVRSTPNPMAQILPGTTVLKTKPAPYMASFSSRGPNIIDPNILKPDITAPGVDILAAWTAEDGPTRMTFNDKRVVKYNIFSGTSMSCPHVAAAAVLLKAIHPTWTTAAIRSALMTTAMPTDNTGHPLIDEAGNLATPFAMGSGHFNPKRAAHPGLVYDASYMDYLLYTCKLGVAKNLNITYCPKSFVEHFELNYPSIQIHGLNYSRTIKRTVTNVGRRRSIYKFSASSPKEFSITATPDTLTFNHVGQKMNFIITVTANLSQIPTNYGPDKYYFGWYAWTRKHIVAKGLKELENLGETGNNR 794
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00860 794 FunFam Subtilisin-like protease SBT1.5 151 381 - -
Vimu2g00860 794 Pfam Subtilase family 149 617 IPR000209 GO:0006508|GO:0008236
Vimu2g00860 794 CDD PA_subtilisin_like 375 504 - -
Vimu2g00860 794 Pfam PA domain 419 489 IPR003137 -
Vimu2g00860 794 PRINTS Subtilisin serine protease family (S8) signature 227 240 IPR015500 -
Vimu2g00860 794 PRINTS Subtilisin serine protease family (S8) signature 573 589 IPR015500 -
Vimu2g00860 794 PRINTS Subtilisin serine protease family (S8) signature 149 168 IPR015500 -
Vimu2g00860 794 SUPERFAMILY Subtilisin-like 142 647 IPR036852 GO:0004252|GO:0006508
Vimu2g00860 794 Pfam Peptidase inhibitor I9 31 109 IPR010259 -
Vimu2g00860 794 Gene3D Peptidase S8/S53 domain 151 656 IPR036852 GO:0004252|GO:0006508
Vimu2g00860 794 CDD Peptidases_S8_3 111 609 IPR034197 -
Vimu2g00860 794 Pfam Fibronectin type-III domain 683 775 IPR041469 -
Vimu2g00860 794 Gene3D - 658 780 - -
Vimu2g00860 794 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 65 777 IPR045051 -
Vimu2g00860 794 ProSiteProfiles Serine proteases, subtilase domain profile. 130 643 - -
Vimu2g00860 794 FunFam subtilisin-like protease SBT1.5 368 511 - -
Vimu2g00860 794 Gene3D - 368 511 - -
Vimu2g00860 794 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 22 114 IPR037045 -
Vimu2g00860 794 ProSitePatterns Serine proteases, subtilase family, serine active site. 574 584 IPR023828 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g00860 Vimu-Chr2 5317290 5323463 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g00860 23 777 Subtilisin-like Serine Gene Family AT5G45650 55.527 0.0 834
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g00860 - - gmx:100793064 1323.15