Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00848 ATGGCTTTTCCAAACCCGTCCATGTCAGTTTCTCCACAGAGGAAGATGGGAAGGGGGAAGATTGAGATCAAGCGGATTGAGAACACCACCAATCGCCAAGTCACTTTCTGCAAGCGCAGAAACGGCTTGCTCAAGAAAGCATATGAATTATCTGTTCTTTGTGATGCAGAGGTTGCTCTAATCGTCTTCTCTAGCCGTGGCCGTCTCTATGAATATGCTAATAACAGTGTCAAAGAAACTATTGAGAGGTACAAAAAAGCATGCTCAGATTCGTCTGCTGGATCTGCTTCTGAGGCTAATGCTCAGTTTTACCAGCAAGAAGCAGATAAACTTCGTGCACAAATAAGTAGCCTGCAGAATAACAACAGGCAAGAGGAATTGCAAATGATGGGTGAGTCTTTGGGCTCTATGACTACCAAGGATCTCAAAAACCTGGAGAGTAAACTAGAAAAAGGAATTAGTAGGATTCGTTCAAAAAAGGAGATAGACTTGCACAACAACAACCAGCTTCTTCGAGCGAAGATAGCTGAAAGTGAGAGGAGCCACAATATGGGTGTGTTGCCTGGAGGCACAAGCTATGACTCTATGCAGTCTCAGCAGCCATTTGACTCTCGTGGCTACTTCCAAGTCACTGGATTACAACCCAGTAGTCAGTATGCCCGACAAGATCAGATGTCCCTTCAATTAGTGTAA 693 0.4444 MAFPNPSMSVSPQRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVKETIERYKKACSDSSAGSASEANAQFYQQEADKLRAQISSLQNNNRQEELQMMGESLGSMTTKDLKNLESKLEKGISRIRSKKEIDLHNNNQLLRAKIAESERSHNMGVLPGGTSYDSMQSQQPFDSRGYFQVTGLQPSSQYARQDQMSLQLV 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00848 230 ProSiteProfiles K-box domain profile. 101 199 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vimu2g00848 230 SUPERFAMILY SRF-like 17 96 IPR036879 GO:0003677|GO:0046983
Vimu2g00848 230 Gene3D - 28 109 IPR036879 GO:0003677|GO:0046983
Vimu2g00848 230 PANTHER SERUM RESPONSE FACTOR HOMOLOG 16 191 - -
Vimu2g00848 230 MobiDBLite consensus disorder prediction 181 200 - -
Vimu2g00848 230 ProSitePatterns MADS-box domain signature. 18 72 IPR002100 GO:0003677|GO:0046983
Vimu2g00848 230 PRINTS MADS domain signature 38 53 IPR002100 GO:0003677|GO:0046983
Vimu2g00848 230 PRINTS MADS domain signature 53 74 IPR002100 GO:0003677|GO:0046983
Vimu2g00848 230 PRINTS MADS domain signature 18 38 IPR002100 GO:0003677|GO:0046983
Vimu2g00848 230 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 25 72 IPR002100 GO:0003677|GO:0046983
Vimu2g00848 230 Pfam K-box region 98 181 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vimu2g00848 230 ProSiteProfiles MADS-box domain profile. 16 76 IPR002100 GO:0003677|GO:0046983
Vimu2g00848 230 SMART madsneu2 16 75 IPR002100 GO:0003677|GO:0046983
Vimu2g00848 230 CDD MADS_MEF2_like 17 91 IPR033896 GO:0000977|GO:0045944
Vimu2g00848 230 FunFam agamous-like MADS-box protein AGL11 28 110 - -
Vimu2g00848 230 Coils Coil 101 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g00848 Vimu-Chr2 5218985 5227036 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g00848 14 230 MADS-box Gene Family AT3G58780 60.251 2.91e-89 262
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vimu2g00848 K-box 8.7e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g00848 K09264 - gmx:732595 385.185
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g00848 2 5218985 5227036 Vimu2g00848 2 5218985 5227036 ECH
Vimu11g03789 11 59948385 59953101 Vimu2g00848 2 5218985 5227036 PCT