Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00847 ATGGAAACCAAAAACCCTGCGAGGTTTACGCTGGGGAAGCAGTCATCGCTTGCTCCAGAACGCCATAAGGAAGGAGCGGAGCCTCAAAACGAAGGAGACGCTGTTGATCAGGGTGTGAGGTTGATGTACTCGGCGTTCGAAGGGGACGTGGATGGTATTCGCGAGGTGTTGGAGTCTGGTGTGAGTGTGAATTACAAGGATATTGATTATCGCACTGCTCTTCATGTCGCATCATGCGAGGGCTTCACTGATGTCGCTGATTTGTTACTTCAAAAAGGTGCTGAAGTTGACGCTAAAGATCGATGGGGGAGCACGGCGTGCATTTCTTCGAGCAAGTTTAAGTTATTCTCTTATCAAAAGGAGGAGATTGATGCCTTGATCTTAGATTCTATTAGATATGTAATCACGGGACTAATTATTAGTTTTGCATCTCTTAAACAGCCACTTGCAGATGCTATTTTTTATAAAAGAAATGACGTGATCAAACTATTGGAGAAGCATGGAGCAAAGCCACTGATGGCCCCTATGCATGTTAATCATGCACGTGAAGTCCCAGAGTATGAAATAAATCCTGAAGAGCTCGATTTTACCAACAGTTTGGAGATAACGAAGGGGACTTTCTGTAGTGCATTGTGGCGTGGAACAGAGGTTGCAGTAAAAAAGCTTGGGGAGGAAGTAATTAGTGATGAGGAGAAAGTGAAGGCTTTCAGAGATGAACTTGCCTTGTTCCAGAAGATCCGGCATCCAAATGTCATCCAATTTCTGGGTGCTGTGACTCAGAGCAGTCCAATGATGATTGTGACAGAATATCTTCCCAAGGGAGATCTTCGTGATTTCTTGAAAAGAAAGGGAGCTTTGAAACCATCTACAGCTGTGAGATTTGCACTTGATATTGCTAGGATCTTGCCTATTTTTATATTATGGAGTGAACTTTGGTTCAAAAAAGTTGGATCTAGTTCTGTCTTGACATTCTCATATTCACGAAGTGGTTGTTTGGGTGCTACTTACTTTGCCAATGTTCAGTCGAGGTTTTCTATTCCGTATGAGTTGGGGGTAAGGGGAGTGGGTTATTTGCATGAAAATAAGCCATCACCCATTATTCACCGTGATCTTGAACCTTCTAATATTTTGCGGGATGATTCTGGGCACCTAAAAGTTGCAGACTTTGGGGTTAGCAAGTTGCTGGCCGTTAAAGAAGACAAGCCTCTAACATGCCAAGAAACTTCCTGCCGGTATGTGGCTCCGGAAGTTTTCAAACAAGAAGAATATGACACCAAAGTGGATGTATTTTCATTTGCACTAATTCTACAAGAGATGATTGAAGGCTGCCTTCCTTTTTCTGCAAAGCAAGAAGATGAAGTTCCTAAGGTGTATGCTGCCAAAGAGCGTCCACCTTTTCGAGCTCCATCCAAGCATTACTCCCATGGAATTAGAGAATTGATTGAGGAGTGCTGGAATGAAAATCCAGCTATGAGGCCAACATTCAGACAAATTATAACCAGGCTGGAGTTCATCTACAACACAATCGGTCAAAAAAGACGTTGGAAGGTTAGGCCATTGAAATGTTTCCAAAATCTGGAAGCCTTGTTAAAGAGAGATCATTCAAATGGAAGCAGTCGTGGTTCATCTCGCTCTAAATCCAGCAGAATATGA 1653 0.4295 METKNPARFTLGKQSSLAPERHKEGAEPQNEGDAVDQGVRLMYSAFEGDVDGIREVLESGVSVNYKDIDYRTALHVASCEGFTDVADLLLQKGAEVDAKDRWGSTACISSSKFKLFSYQKEEIDALILDSIRYVITGLIISFASLKQPLADAIFYKRNDVIKLLEKHGAKPLMAPMHVNHAREVPEYEINPEELDFTNSLEITKGTFCSALWRGTEVAVKKLGEEVISDEEKVKAFRDELALFQKIRHPNVIQFLGAVTQSSPMMIVTEYLPKGDLRDFLKRKGALKPSTAVRFALDIARILPIFILWSELWFKKVGSSSVLTFSYSRSGCLGATYFANVQSRFSIPYELGVRGVGYLHENKPSPIIHRDLEPSNILRDDSGHLKVADFGVSKLLAVKEDKPLTCQETSCRYVAPEVFKQEEYDTKVDVFSFALILQEMIEGCLPFSAKQEDEVPKVYAAKERPPFRAPSKHYSHGIRELIEECWNENPAMRPTFRQIITRLEFIYNTIGQKRRWKVRPLKCFQNLEALLKRDHSNGSSRGSSRSKSSRI 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00847 550 Gene3D - 7 187 IPR036770 -
Vimu2g00847 550 FunFam serine/threonine-protein kinase STY46-like 189 272 - -
Vimu2g00847 550 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 141 505 - -
Vimu2g00847 550 Gene3D Phosphorylase Kinase; domain 1 188 270 - -
Vimu2g00847 550 ProSiteProfiles Ankyrin repeat region circular profile. 69 101 - -
Vimu2g00847 550 Gene3D Transferase(Phosphotransferase) domain 1 271 546 - -
Vimu2g00847 550 SUPERFAMILY Protein kinase-like (PK-like) 352 505 IPR011009 -
Vimu2g00847 550 ProSiteProfiles Protein kinase domain profile. 161 505 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g00847 550 CDD STKc_MAP3K-like 202 502 - -
Vimu2g00847 550 ProSiteProfiles Ankyrin repeat profile. 69 101 IPR002110 GO:0005515
Vimu2g00847 550 Pfam Ankyrin repeat 71 100 IPR002110 GO:0005515
Vimu2g00847 550 MobiDBLite consensus disorder prediction 1 34 - -
Vimu2g00847 550 PIRSF ILK 144 308 - -
Vimu2g00847 550 PIRSF ILK 1 121 - -
Vimu2g00847 550 PIRSF ILK 325 525 - -
Vimu2g00847 550 SUPERFAMILY Ankyrin repeat 41 173 IPR036770 -
Vimu2g00847 550 SMART ANK_2a 69 98 IPR002110 GO:0005515
Vimu2g00847 550 SMART ANK_2a 36 65 IPR002110 GO:0005515
Vimu2g00847 550 SMART ANK_2a 144 173 IPR002110 GO:0005515
Vimu2g00847 550 Pfam Protein tyrosine and serine/threonine kinase 213 502 IPR001245 GO:0004672|GO:0006468
Vimu2g00847 550 SUPERFAMILY Protein kinase-like (PK-like) 203 302 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g00847 Vimu-Chr2 5193187 5200912 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g00847 8 523 MAP Kinase Kinase Kinase AT4G18950 53.257 0.0 526
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-5 Vimu2g00847 PK_Tyr_Ser-Thr 8.5e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g00847 - - gmx:100790126 786.178