Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00838 ATGGTTACATGTTTATGTTGTCAATTAGTTGATGCCCTTAGAGAAATTGCGAGTGCGATGGGATCGGCATATTGGAAATTTGATGCTGATTCCTGCATTATTGAAATGGTTGGACTAACGCAAGAACCACCAGCTGAATCAGAGAGGAGCATTGGTTGTGACTGCAGTTTTGAAGACAATACTGTCTGTCATGTTGTGAAGATGGTAAAAGATGATAGAGGAGAAAAGCTTTATGCCGGAGACGGAGATGTTCAGGGTGGCACTGCAACTTATTTCTACAGTGATAATGATCACTGGGGATTTAGTAGCACTGGGGACTTCATGGATGATTTTGAGTCCCAGAACGTACGTTACATTGTATCTCTTCCATCTTCAAATCTGCCAGAATTATATAAAACGGCGCGTGTATCTCCAATTACACTTACTTATTTCCACAACTGCATGCAAAATGGGAACTACACTGTAAACCTTCACTTTGCTGAGATACAGTTTACAAATGATAGAACATATAAAAGTCTTGGGAAGCGCATATTTGATATCTATGTTCAGGGAAGAATCACTCGCAAAAATTTTAATATAGAGAATGAAACAAATGTTACTAAAAAACCACTGGTACTGCCCATACACAATATCAGCATCACAAATAATATGTTGGAGATTAGATTCTACTGGGCTGGAAAAGGAACGACTAGAATTCCTGACATTGGAGTTTATGGCCCCCTTGTATCAGCTATATCTGTGGTTTCAGATTCTAGAACTTGCTCAAATGGAGAAAAGAAAGTTGCTGTTTCGATAATCATTGCCATTGTAGCCGGTGCTGTATGCTTAGTGCTATTTATGTCTGGACTCATTTGGTGGAAGTGGAAAGGCTTTTTCAGAGGGAAACCGCGAAAGAAAGAAGATGCAAAAGATGGAGATATTCAGGCAGGTAATTTTAGCTTGGAGCATATCAGAGCTGCCACCAATGACTTCTCTTCTGCTAATAAGATAGGAGAAGGCGGTTTTGGTCCCGTATACAAGGTTTCTGGTAACCGGGATGCGACAATGCAGGGTCAATTGGTAGATGGAACTTTTATAGCGGTCAAGCAATTGTCATCAAAATCACGGCAGGGAAATCGGGAATTCATAAATGAAGTAGGGTTGATATCTTGTGTGCAACACCCCAACCTCGTAAAGCTTCATGGATACTGTGCTGAAGGGGAACAACTTTTGCTGGTATATGAGTACATGGAAAATAACAGCCTGGCCCGAGCTTTATTTGGCTCCATGATCTCTGTAGGTAGTGAGAACCAACGGCTTAAATTGGATTGGCCCACAAGGTTTAGGATTTGCATTGGCATAGCGAAAGGTCTAGCATTTCTCCATGATGAGTCAAGATTCAAGATAGTGCACAGAGATATCAAGGCTTCTAATGTGTTACTCGATGGGGATTTGAATCCAAAAATATCCGACTTTGGCTTGGCTAGGCTTGATGAAACAGAGAAAACCCATATCAGCACCCGAGTTGCTGGGACTATAGGATATATGGCACCAGAATATGCATTATGGGGCCATCTTAGTTACAAGGCCGATGTTTACAGTTTTGGAGTTGTAGCATTAGAAATTGTTAGTGGGAAAAGCAATAACAATTATTTACCAGACGATGGAAGTGCTTGTCTTCTTGATTGGGCATGTCAGTTAAATCAAGCTAAGAAATTAGTGGGGCTTGTTGATGAAAGGTTGGGGCCAGACCTTAATGAAACGGAATTAGAAAAGGTGGTCAGAATTGCTCTCCTGTGCACAAATGCTTCTGTATCTCTTAGGCCTACGATGTCTGAGGTGGTGAATATGTTTGAAGGAGAATTAGATATTCCTGATGCAATTCCAGAACCAAGTACCTACAGTGAGGATTTAAGGTTCAAAGCCTTAAGGGACCTCCATCAACATCGATCAAAGCAGAGTTTGAGTGGTAATTCATCGTCTCATATATTCAGCTCAGCATCTGGTGGTAATACTCACACTAGCAGTAATATTGAGGATCATTGTTCAACTGAAAATAGTTAG 2043 0.4087 MVTCLCCQLVDALREIASAMGSAYWKFDADSCIIEMVGLTQEPPAESERSIGCDCSFEDNTVCHVVKMVKDDRGEKLYAGDGDVQGGTATYFYSDNDHWGFSSTGDFMDDFESQNVRYIVSLPSSNLPELYKTARVSPITLTYFHNCMQNGNYTVNLHFAEIQFTNDRTYKSLGKRIFDIYVQGRITRKNFNIENETNVTKKPLVLPIHNISITNNMLEIRFYWAGKGTTRIPDIGVYGPLVSAISVVSDSRTCSNGEKKVAVSIIIAIVAGAVCLVLFMSGLIWWKWKGFFRGKPRKKEDAKDGDIQAGNFSLEHIRAATNDFSSANKIGEGGFGPVYKVSGNRDATMQGQLVDGTFIAVKQLSSKSRQGNREFINEVGLISCVQHPNLVKLHGYCAEGEQLLLVYEYMENNSLARALFGSMISVGSENQRLKLDWPTRFRICIGIAKGLAFLHDESRFKIVHRDIKASNVLLDGDLNPKISDFGLARLDETEKTHISTRVAGTIGYMAPEYALWGHLSYKADVYSFGVVALEIVSGKSNNNYLPDDGSACLLDWACQLNQAKKLVGLVDERLGPDLNETELEKVVRIALLCTNASVSLRPTMSEVVNMFEGELDIPDAIPEPSTYSEDLRFKALRDLHQHRSKQSLSGNSSSHIFSSASGGNTHTSSNIEDHCSTENS 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00838 680 SMART serkin_6 324 611 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g00838 680 Gene3D Phosphorylase Kinase; domain 1 293 409 - -
Vimu2g00838 680 Gene3D Transferase(Phosphotransferase) domain 1 410 618 - -
Vimu2g00838 680 Pfam Protein tyrosine and serine/threonine kinase 327 610 IPR001245 GO:0004672|GO:0006468
Vimu2g00838 680 ProSitePatterns Serine/Threonine protein kinases active-site signature. 462 474 IPR008271 GO:0004672|GO:0006468
Vimu2g00838 680 ProSiteProfiles Protein kinase domain profile. 324 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g00838 680 MobiDBLite consensus disorder prediction 644 680 - -
Vimu2g00838 680 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 101 647 - -
Vimu2g00838 680 MobiDBLite consensus disorder prediction 645 680 - -
Vimu2g00838 680 Pfam Malectin domain 71 245 IPR021720 -
Vimu2g00838 680 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 293 409 - -
Vimu2g00838 680 SUPERFAMILY Protein kinase-like (PK-like) 309 632 IPR011009 -
Vimu2g00838 680 FunFam Putative LRR receptor-like serine/threonine-protein kinase 410 623 - -
Vimu2g00838 680 Gene3D - 75 252 - -
Vimu2g00838 680 CDD STKc_IRAK 330 613 - -
Vimu2g00838 680 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 60 250 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g00838 Vimu-Chr2 5130990 5139150 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g00838 69 661 Receptor kinase-like Gene Family AT1G07650 51.500 0.0 563
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vimu2g00838 PK_Tyr_Ser-Thr 1.7e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g00838 - - qsa:O6P43_032037 817.379