Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00832 ATGTCGATGGTGGCTGATAATTCCGCAAACGGTGGAAACCACCAGGTGGTTTTAAATGTAAACAGTGAAACCCCCAAAAAGTGTGATCCCTCAACCAACCAAGACTGTGTTCCTCTCTTGCAGAAGTTGGTAGCAGAGGTGGTGGGAACGTACTTTTTGATATTTGCAGGGTGTGCTTCGGTGGTGGTGAACCTTGACAAGGACAGAGTGATAACACAACCAGGGATTTCAATTGTTTGGGGACTCACTGTTATGGTTTTGGTTTACTCTGTTGGTCACATCTCTGGTGCTCATTTTAATCCTGCTGTAACCATTGCTCATGCTTCCACCAGAAGGTTTCCACTGAAGCAGGTACCAGCTTATGTGATAGCTCAGGTGGTTGGATCCACACTTGCCAGCGGAACTCTGAGACTTATATTCAATGGCAAGAATGACCATTTCGCAGGAACACTTCCCGCTGGTTCTGACTTGCAATCTTTTGTGATCGAATTCATAATCACTTTTTATCTCATGTTTGTCATTTCTGGAGTTGCCACCGATAACAGAGCGATTGGTGAGTTGGCAGGGCTTGCAGTTGGATCGACGGTACTGCTAAATGTGATGTTTGCCGGGCCAATCACAGGGGCATCGATGAATCCAGCAAGAAGCTTAGGGCCAGCAATTGTGCACAATGAGTACAGAGGAATATGGATATATCTGGTGTCAACAACTCTTGGAGCTGTGGCTGGTGCATGGGCCTACAATTTCATCAGATACACTAACAAGCCAGTGCGTGAAATCACCCAGAGTGCATCTTTCCTCAAAGGTGGTCAAGCTGACTGA 822 0.4635 MSMVADNSANGGNHQVVLNVNSETPKKCDPSTNQDCVPLLQKLVAEVVGTYFLIFAGCASVVVNLDKDRVITQPGISIVWGLTVMVLVYSVGHISGAHFNPAVTIAHASTRRFPLKQVPAYVIAQVVGSTLASGTLRLIFNGKNDHFAGTLPAGSDLQSFVIEFIITFYLMFVISGVATDNRAIGELAGLAVGSTVLLNVMFAGPITGASMNPARSLGPAIVHNEYRGIWIYLVSTTLGAVAGAWAYNFIRYTNKPVREITQSASFLKGGQAD 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00832 273 Pfam Major intrinsic protein 38 247 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu2g00832 273 ProSitePatterns MIP family signature. 98 106 IPR022357 -
Vimu2g00832 273 NCBIfam MIP family channel protein 45 247 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu2g00832 273 PRINTS Major intrinsic protein family signature 41 60 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu2g00832 273 PRINTS Major intrinsic protein family signature 117 136 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu2g00832 273 PRINTS Major intrinsic protein family signature 162 180 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu2g00832 273 PRINTS Major intrinsic protein family signature 193 215 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu2g00832 273 PRINTS Major intrinsic protein family signature 230 250 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu2g00832 273 PRINTS Major intrinsic protein family signature 80 104 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu2g00832 273 CDD MIP 41 250 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu2g00832 273 PANTHER AQUAPORIN NIP2-1 23 266 IPR034294 -
Vimu2g00832 273 Gene3D Glycerol uptake facilitator protein. 4 264 IPR023271 -
Vimu2g00832 273 SUPERFAMILY Aquaporin-like 37 262 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g00832 Vimu-Chr2 5101955 5103823 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g00832 37 268 Major Intrinsic Protein MIP AT5G37820 62.931 3.14e-101 296
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g00832 K09874 - gmx:100812577 507.294
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g03777 11 59826660 59828545 Vimu2g00832 2 5101955 5103823 PCT