Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00824 ATGATGGAGGAAGCTCAGGGCAATTCTAGTTCCTTGCCTCCATTCCTCAGTAAGACTTATGACATGGTGGATGATCCTTCCACCAATTCCATTGTTTCCTGGAGTGTCACCAATAAGAGTTTCGTTGTTTGGAACCCACCAGAGTTTTCAAGGGATTTGTTACCCAGATTCTTTAAGCACAGTAACTTCTCCAGTTTTATCAGGCAGCTCAACACTTATGGGTTTAGAAAGATTGATCCTGAACTATGGGAATTTGCCAATGAGGGTTTTGTGAGAGGTCAGCCACATCTTTTGAAGAATATTCATAGGCGCAAACCAGTTCATAGCCATTCTTTGCAGAATATTCAGGGTCAGGGATCTTCTTCAATGACTGAATCAGAAAGGCAGAGTTTCAAGGATGAGATAAAGAAGCTTAAAGATGAAAAAGATCAAGTACTTCGGGAGCTAGAGAGGCACGAACAGGAGTGGAAAATGTATGAGGTACAACTACAATATTCAAATGATCGATTGGAACAGTTGGAAAAGAAGCAAGAAAATTTGGTTTCTTCTGTTTCTGAAGTGCTGCAGAAACCTGGGATTGCCTTAAATCTCTTGCCTCTGACAGAAAAAGGGGATAGAAAACGTAGGTTGCCAAGAAGTGGTATCTTCAGTGATGATGCTGGCATTGATGATCATATGGAAACTTCCTCTGTATTACCTGGGGTAAATGCAGAGGGTACCTCTATTTTCGCCCCAAACATGGAGCGATTTGATCTACTTGAGTCGTCCATTATGTTTTGGGAGAATATTGCACATGATGTTCAAAGTCATGTGAACATGGATTTTGATGAAACGACAAGTTGTGCAGATAGTCCAGCTATATCTTCTGTGCAACTGGAGGTTGAAGTTCAACCTAAGTCACCCGGAACCAACGTGAATTCTGAGTCCGCTGTAGCTGCTGTTTCTGATCTTGATGCATCAAAAGAACCACCTGTGGGAACAGTTTCTGTGGCTGCTGGTGTTAATGATATATTCTGGGAACGTTTCTTGACAGAGAATCCTGGTTCTGAGAATCAGGAAGTGCATTCTGAAAGGAAAGATTCTGATGGCAGAAGTAATACCAAATTTTGGTGGAACATTAGGAATGTAAATAACCCTCCAGAACAGATGGGGCATTCTTAG 1161 0.4169 MMEEAQGNSSSLPPFLSKTYDMVDDPSTNSIVSWSVTNKSFVVWNPPEFSRDLLPRFFKHSNFSSFIRQLNTYGFRKIDPELWEFANEGFVRGQPHLLKNIHRRKPVHSHSLQNIQGQGSSSMTESERQSFKDEIKKLKDEKDQVLRELERHEQEWKMYEVQLQYSNDRLEQLEKKQENLVSSVSEVLQKPGIALNLLPLTEKGDRKRRLPRSGIFSDDAGIDDHMETSSVLPGVNAEGTSIFAPNMERFDLLESSIMFWENIAHDVQSHVNMDFDETTSCADSPAISSVQLEVEVQPKSPGTNVNSESAVAAVSDLDASKEPPVGTVSVAAGVNDIFWERFLTENPGSENQEVHSERKDSDGRSNTKFWWNIRNVNNPPEQMGHS 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00824 386 FunFam Heat shock transcription factor 1 8 105 - -
Vimu2g00824 386 SMART hsfneu3 11 104 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vimu2g00824 386 MobiDBLite consensus disorder prediction 351 365 - -
Vimu2g00824 386 Coils Coil 170 190 - -
Vimu2g00824 386 MobiDBLite consensus disorder prediction 366 386 - -
Vimu2g00824 386 Pfam HSF-type DNA-binding 15 104 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vimu2g00824 386 ProSitePatterns HSF-type DNA-binding domain signature. 54 78 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vimu2g00824 386 MobiDBLite consensus disorder prediction 348 386 - -
Vimu2g00824 386 Coils Coil 121 162 - -
Vimu2g00824 386 SUPERFAMILY "Winged helix" DNA-binding domain 10 104 IPR036390 -
Vimu2g00824 386 PRINTS Heat shock factor (HSF) domain signature 66 78 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vimu2g00824 386 PRINTS Heat shock factor (HSF) domain signature 53 65 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vimu2g00824 386 PRINTS Heat shock factor (HSF) domain signature 15 38 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vimu2g00824 386 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 6 219 IPR027725 -
Vimu2g00824 386 Gene3D - 7 105 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g00824 Vimu-Chr2 5048089 5049385 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g00824 9 385 HSF AT4G18880 50.254 8.32e-113 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Vimu2g00824 HSF_DNA-bind 5.4e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g00824 K09419 - gmx:100784280 640.188
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g00824 2 5048089 5049385 Vimu2g00824 2 5048089 5049385 ECH
Vimu2g00824 2 5048089 5049385 Vimu11g03775 11 59778473 59779807 ECH
Vimu11g03775 11 59778473 59779807 Vimu2g00824 2 5048089 5049385 PCT