Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00823 ATGAAGTGGGGAGGAAGAAATCATTCTTCAACTTCCTCTTCTTTTGTCTCTTCCTTCATTTCTCATGCATCTCCTTTCTCTTGGTTCTCCAAGTTCAAGAATATGAGAATCAATTCGGAGCCAAGTGCTGCAAAAATGAAGCAAAAGGCAAAGCCTAGTAGTTCACCTCAATATTTCTGTGAGATTGGAGATAGAAGATGTTGTGTAAAGAATGATGGTGATTTCTGTAGACAACGTTTAAATGAAGAGAGTTATGAGGATAAGAAGAATAGAGATATTGATGAGAGTGTGATTCCCTCCTCAAGTTGCTTTGGTGGTAGAAGGGTTGCTAAAGGCACACTAGAGTTAAAGGAGAGGGATATTGGTGAAGGAGAAGAAAGAAAGTTGGTGGATGATGGGAAGGTTTCAAAGAAGATGGATGTGTACAATAGAGAAAAGGAATATGAAAACTTAAGGAAGAGATTTGAGAGGAAAGCAAAAAAGGCTTTTCAAGACCAACTCTTGACACTTGAAAGAGAAGTTGAGGAACTTAAGTTTGGATCAAGTAAAGCAGTGGAAAAAGATGTGTTGCAATTGGAATCACCTAGAACAATTTGCACCCCAAGAACACACGCTTTTTCTTCTTCAGCAATTTCAAGGAATCCCATCCTTGGAAATGTTATAGAAAATTTTGAGAAAAATGAAAGGCTGTCTCACAAGAAAATGAGTTCTGAGAGGCAGAACTTGAAACAAACTGAGGAGACGAAGGTAAAGACCAACAGGAATAAGCAATCACATCATCTCAACAGAGAACATCAGAGGAGGAAACAAAAGCCGAGCTCTAGGGTCAAAATACATTCTCCAAGGATGGTTTCTAAGGTTGAAATTTGCAAAATAAAGGCCCTGGAAGACATGAAGAAAGCTAAACTAAAGACGAAGAAAGAAAAGGAGGAGATTGTGGAGGAAATACCAGTATTAGAAAGCTTTGCTGTGATTAAGTCTTCAATAGATCCAATGCAAGATTTCAGAGACTCGATGATTGAGATGATCATAGAGAATCAGATTATTCAGCCAGAAGAAATGGAAGATCTTTTGGTATGTTATCTGACTTTGAATGCAGATGAATATCATGATCTCATCATCAAGGTGTTCAGGAAGGTATGGTTTGACATGAGCCAAGGTATTTTGGGTATTAAACTAAATATGCAATGTGGTTACTATGAATAA 1206 0.3773 MKWGGRNHSSTSSSFVSSFISHASPFSWFSKFKNMRINSEPSAAKMKQKAKPSSSPQYFCEIGDRRCCVKNDGDFCRQRLNEESYEDKKNRDIDESVIPSSSCFGGRRVAKGTLELKERDIGEGEERKLVDDGKVSKKMDVYNREKEYENLRKRFERKAKKAFQDQLLTLEREVEELKFGSSKAVEKDVLQLESPRTICTPRTHAFSSSAISRNPILGNVIENFEKNERLSHKKMSSERQNLKQTEETKVKTNRNKQSHHLNREHQRRKQKPSSRVKIHSPRMVSKVEICKIKALEDMKKAKLKTKKEKEEIVEEIPVLESFAVIKSSIDPMQDFRDSMIEMIIENQIIQPEEMEDLLVCYLTLNADEYHDLIIKVFRKVWFDMSQGILGIKLNMQCGYYE 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00823 401 MobiDBLite consensus disorder prediction 260 276 - -
Vimu2g00823 401 NCBIfam uncharacterized plant-specific domain TIGR01568 322 384 IPR006458 -
Vimu2g00823 401 Coils Coil 145 165 - -
Vimu2g00823 401 MobiDBLite consensus disorder prediction 231 259 - -
Vimu2g00823 401 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 199 385 IPR038933 GO:0045892
Vimu2g00823 401 MobiDBLite consensus disorder prediction 231 278 - -
Vimu2g00823 401 Coils Coil 295 315 - -
Vimu2g00823 401 Pfam Transcriptional repressor, ovate 328 384 IPR006458 -
Vimu2g00823 401 ProSiteProfiles OVATE domain profile. 324 383 IPR006458 -
Vimu2g00823 401 Coils Coil 235 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g00823 Vimu-Chr2 5040658 5041863 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Vimu2g00823 Ovate 2.2e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g00823 - - gmx:102666239 530.791
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g00823 2 5040658 5041863 Vimu2g00823 2 5040658 5041863 ECH
Vimu11g03774 11 59755317 59756528 Vimu2g00823 2 5040658 5041863 PCT