Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00821 ATGGCTTCGGGAGCTATTTTCTCGTCGCTCAGGCGGAGGAGGTCGCCGACGTTGGACGCGTTTCTGGCCCCCGTTGACTTAAGTGACGTCGCTTTGGTTCAGACCCTTCTCTCTGTTGCCCGCGAGATTGTGTCATGTTTTTCTAACCGTTGCTTCTTCTTCCAGCGCAAGAACTCGCTGTCTCTGATCCGAAGAGTCGAGGCTTTCCAGTTGCTTTTGGAGTATTTGCGTGATTCCGATTCAGGTTCTTCGTGTCTTCCACCCACGGCGGTGCTCTGTCTCAAGGAGCTTTACCTCTTGCTCTACCGCTCCAAGATTCTCCTCGATTACTGCGCCCAATCGAGTAAGTTGTGGCTCTTGCTTCAGAACCATTCCATCTCTGGTCACTTCCACGATTTGAACCAGGAGATTTCGACCCTTTTGGATGTTTTTCCCGTTAAGGATGTGTTGTTGAGTAAGGATATTAGGGAACAGGTTCAGCTCTTGCAGAAGCAGTCGAGGAGAGCTAAGCTTTTTATAGATATGAAGGACGATGCTCTCAGGATTCTTTTTTTTTCCTTTCTTGACGAGTTTGAGAATGGAAGGATTCCCGATTCTGCTGAATTGAGATCTTTCTATGTTGAGAAGTTGCATATTGTGGATGCAGATAGTTGTAGGACTGAAATTGAGGCCTTGGAGGAGCAGATTGTTAATCACGAGGGTGACATTGAGCCTACTATTTCTGTGCTTAATGGGTTGGTGGCTATGACTAGGTATTGCAGGTTTTTGCTTTTTGGCTTTGAGGAGGATGAACTTGGTCTAGAGAACGGGAGTCGGAAGAAACCTAAGAAGAGGATGATTACTCGGGAAATTGCAGAAACCTTTTTTACTGTTCCTAAGGACTTCTCCTGTCCAATTTCATTGGATTTGATGAGAGATCCTGTAATTATTTCCACTGGTCAAACATATGACAGGAGTTCCATTTCAAGGTGGATGGAAGAAGGGCACACTACTTGTCCCAAAACAGGTCAATTGCTTGCACACACTCGCCTTGTTCCGAACCGTGCTCTGAGGAATTTGATTGTGCAGTGGTGCACCGCACATGGAGTTCCTCTCGATCCATCGGAGGTCATGGATGCGATGGGTGAAGGTTTTACAACAGCTTGTCCTACCAAAGCTGCCGTTGAAGCAAACAGAGCCACAGCGAAGCTTCTTATTCAACAGCTTGCTGGAGGTTCTCAGGCTGGGAAGACTGTGGCTGCTCGGGAGATTAGGTTGCTTGCAAAAACGGGAAAGGAAAACCGCTCATTCATTGCAGAAGCAGGGGCGATTCCCTATCTTAGGAATTTACTTTCATCGCCCAATGCTGTCGCTCAGGAGAATTCCGTGACTGCACTGCTCAATTTGTCCATTTTTGACAAGAACAAAAGTAGGATCATGGACGAGGAAGGGTGTCTAGGATCAATTGTTGATGTGTTGAGATTTGGACACACCACAGAGGCAAGGGAAAATGCTGCTGCAACTTTGTTCAGTCTATCGGCCGTCCATGACTATAAGAAAATAATTGCAGATGAGATGGGAGCAGTTGAGGCCCTGGCAGGGCTGTTGCGAGAGGGGACTCCAAGAGGAAAGAAGGATGCTGTGACAGCTTTGTTCAATCTTTCCACACACCCTGAGAATTGTGGTAGAATGATAGAAGCCGGGGCAGTGACAGCACTTGTAGGTGCTTTGGGGAATGAAGGAGTTGCAGAAGAAGCAGCCGGTGCTCTGGTGTTGATCGTCCGGCAGCCTATTGGGGCCAAAGCAGTGGTAAATGAGGAAGCAGCAGTTGCTGGTTTGATCGGAATGATGCGTTGTGGAACCCCGAGAGGTAAAGAGAACGCGGTTGCAGCATTGCTTGAGTTATGCCGGAGTGGAGGTTCAGTTGCAACAGAAAGAGTTGTGAAGGCGCCAGCTTTGGCTGGCTTACTTCAAACCCTTCTTTTTACAGGGACAAAACGTGCAAGAAGAAAAGCAGCTTCACTTGCAAGAGTGTTTCAAAGATGTGAGCATGCATCTTTACCTTACGGTGGATTAGGTGTAGGCTACGCGTTTGCTGACAATTCAACTACAGCCAGGGAAGCCAGCTTTGCCGGTGATGTTTCAGTACCAATGTCCATTTCTGTTTTATAG 2151 0.4756 MASGAIFSSLRRRRSPTLDAFLAPVDLSDVALVQTLLSVAREIVSCFSNRCFFFQRKNSLSLIRRVEAFQLLLEYLRDSDSGSSCLPPTAVLCLKELYLLLYRSKILLDYCAQSSKLWLLLQNHSISGHFHDLNQEISTLLDVFPVKDVLLSKDIREQVQLLQKQSRRAKLFIDMKDDALRILFFSFLDEFENGRIPDSAELRSFYVEKLHIVDADSCRTEIEALEEQIVNHEGDIEPTISVLNGLVAMTRYCRFLLFGFEEDELGLENGSRKKPKKRMITREIAETFFTVPKDFSCPISLDLMRDPVIISTGQTYDRSSISRWMEEGHTTCPKTGQLLAHTRLVPNRALRNLIVQWCTAHGVPLDPSEVMDAMGEGFTTACPTKAAVEANRATAKLLIQQLAGGSQAGKTVAAREIRLLAKTGKENRSFIAEAGAIPYLRNLLSSPNAVAQENSVTALLNLSIFDKNKSRIMDEEGCLGSIVDVLRFGHTTEARENAAATLFSLSAVHDYKKIIADEMGAVEALAGLLREGTPRGKKDAVTALFNLSTHPENCGRMIEAGAVTALVGALGNEGVAEEAAGALVLIVRQPIGAKAVVNEEAAVAGLIGMMRCGTPRGKENAVAALLELCRSGGSVATERVVKAPALAGLLQTLLFTGTKRARRKAASLARVFQRCEHASLPYGGLGVGYAFADNSTTAREASFAGDVSVPMSISVL 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00821 716 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 435 477 IPR000225 GO:0005515
Vimu2g00821 716 ProSiteProfiles U-box domain profile. 290 364 IPR003613 GO:0004842|GO:0016567
Vimu2g00821 716 Pfam U-box domain 291 361 IPR003613 GO:0004842|GO:0016567
Vimu2g00821 716 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 290 364 IPR013083 -
Vimu2g00821 716 SMART arm_5 509 549 IPR000225 GO:0005515
Vimu2g00821 716 SMART arm_5 424 464 IPR000225 GO:0005515
Vimu2g00821 716 SMART arm_5 550 588 IPR000225 GO:0005515
Vimu2g00821 716 SMART arm_5 589 630 IPR000225 GO:0005515
Vimu2g00821 716 CDD RING-Ubox_PUB 292 344 IPR045210 -
Vimu2g00821 716 SMART Ubox_2 294 357 IPR003613 GO:0004842|GO:0016567
Vimu2g00821 716 SUPERFAMILY RING/U-box 280 364 - -
Vimu2g00821 716 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 520 562 IPR000225 GO:0005515
Vimu2g00821 716 FunFam RING-type E3 ubiquitin transferase 367 688 - -
Vimu2g00821 716 Coils Coil 215 235 - -
Vimu2g00821 716 PANTHER U BOX DOMAIN-CONTAINING 64 675 - -
Vimu2g00821 716 Pfam Armadillo/beta-catenin-like repeat 425 463 IPR000225 GO:0005515
Vimu2g00821 716 Gene3D - 394 670 IPR011989 -
Vimu2g00821 716 FunFam RING-type E3 ubiquitin transferase 290 365 - -
Vimu2g00821 716 SUPERFAMILY ARM repeat 396 672 IPR016024 -
Vimu2g00821 716 Gene3D - 27 147 IPR036537 GO:0007166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g00821 Vimu-Chr2 5030655 5032805 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g00821 1 715 U-box Gene Family AT1G29340 69.726 0.0 941
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g00821 - - gmx:100811153 1223.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g00821 2 5030655 5032805 Vimu2g00821 2 5030655 5032805 ECH
Vimu11g03772 11 59731074 59734682 Vimu2g00821 2 5030655 5032805 PCT