Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00809 ATGACTAGGGCTGTCCGTAGTAGGGTGCTTAAAGATGCCAATGGTGATATTAGTGATCATCTTCGCAACCACATCCATTTGACAAATTGCATTCATCTGAAGAACCATATGCACAAGAACAGCCCCATTCTGGCTGATAGGTCAATCATGAGAGACCTTGTTGTGCTGCAGAGATCGCGGTCTCTTCGAGACCCTTCTGCAAGTCCTCCATCATGGCACTCGCCTTCTGTGGTTGACATGCTTTTCAAAAGAGTTGAAAATGATGCGGCGTCTCAAGGGGGGAGAAGGTCTGTAGGTGTTGAGAGAAGAAAGGAAGGGAGAAGATTATCTGGTACTTCACCACCCTTGGTGAGTATAGCTTCATCAAGAGTTGCCCCAGGTGAGATTGGTAGGGGTACTGATGGGATAACGGCACCTAGTGAACGCAGCAGCAGGAGTGGAGTGGGAGATGGCAGGAGGGTTGGGAGAGAGGAATCTGGTAGGAGGAATGAAAAGCCTGACTTTTTGGATGTTAATCAAGAGGACCCTCTCAATCAAGCTGGGAAAAGTTTGGCTGACGATGTTATTTCCAGGCATTCCGAGTCTAAAGATAGAAAGAGCAAACAGAGGGGGAAGAATGTTCGAGATTCTCAAGTGAAGACTCTTTCTGAGCAGCTGAATGATGTTCCTTTGGATAGTGATGATCTAGCATCAACAAATATTCATTTTCGTGGAAGGTTTCCTAGACAGGAGAAAATTATCGAGGAGGCAGATTCCCGGGTGCGCAGTAGTGGCAGTGGAATGAATAGGGGGAAAAGGCGTAAGTTTCGAAGTGCTCGAAGAACTCGTGTTGCCACAACATCAAGAGAAATTGGAGCTGAGAATGAACTTTCTGTGGCTTCGAACTCAATCGCTCAGGCTTCAGCCCACCAGAAATATCACTTGGAGGGGGCTGATGAGTTTGCAGATGATAATGTTACTAGGGCTCCGAAAAATGGGTGTGGCATTCCATGGAATTGGTCCAGAATTCATCACAGGGGTAAAACATTCCTTGACATGGCTGGAAGAAGTTTGTCTTGTGGTTTATCAGACACTAGGCTGAAGAAAGGGACATTTGCTGACAATGGAAGACATATTTCTGAGATGCCTGTGGCATCTGAGCATTCGAGCTCATATACGAAGTCTGATGCAGAGGCACTGCCCTTGCTAGTTGAGGCATCTGTGTCTCACGCAAGCACTGAAAATGCTTGTTGGGATCATGACTATTCTGGGGAACTAGGTCTTTTTGGTGATAACTTATTCAAGCGTGATGTTGATTCTGATCTCGCATCCGAAGCTAGATCTGGTGATCAACGTAAGTTGAGAGGGAATCGCCACAGTCGACACCAAAGTTTAACACAAAAGTACATGCCTCGAACCTTTAGAGATATGGTTGGGCAAAATTTAGTGGCACAAGCTCTTTCTAATGCAGTAATGAAGAGAAAAGTTGGATTGTTGTACGTGTTCTATGGTCCCCATGGCACTGGAAAAACTTCTTGTGCACGCATATTTGCAAGAGCTCTGAATTGTAATTCTTCAGAACACCCAAAACCTTGTGGATTTTGCAATTATTGCATAGCGCATGATATGGGCAAGAGTAGAAATATAAAGGAAGTAGGTCCAGTTAGCAATTTTGACTTTGAGAGCATAATGGACCTACTGGACAATATGATTGTTTCTCAGCTTCCATCACATTACAGAGTGTTTATTTTCGATGACTGTGATACTCTGTCGACGGATTGTTGGAATGCTATATCGAAGGTCATTGACCGAGCACCTAGACGTGTCGTTTTTATCCTTGTCAGTTCTAGTCTTGATGTCTTGCCTCATATAATAATATCCAGGTGTCAAAAATTCTTTTTCCCAAAGCTGAAGGATGCGGATATTATACATACTCTGCAGTGGATTGCAACCAAAGAAGGTCTAGAAATTGAGAAGGATGCCCTGAAACTGATTGCATCAAGGTCGGATGGATCTATGAGAGATGCTGAAATGACGCTTGAACAACTTAGTTTACTTGGACAGAGAATATCCGTTCCTCTTGTTCAGGAATTGGTAGGGCTAATCTCTGATGAGAAATTGGTGGATCTGCTTGATTTGGCATTATCTGCAGACACAGTTAACACCGTGAAGAATTTAAGAGTGATAATGGAAACCGGTGTGGAGCCATTGGCTTTAATGTCACAACTTGCTACAGTAATTACAGATATACTTGCTGGGACCTATGATTTCACAAAAGAAAGGCGAAGAAGGAAGTTCTTCCGTAGACAACCATTGTCCAAAGAAGACATGGAAAAGCTGCGCCAAGCTCTGAAAACCTTATCTGAGGCTGAGAAGCAACTGAGGATGTCCAATGACAAGCTAACATGGCTGACAGCTGCTTTACTTCAGCTTGCTCCGGACCAGCAATATGTGTTACCAACATCATCTGATAATAGTTTCAACCATAGTCCGTTCACTCTAAAAGATGCAGATGCGAGAGAAGCTGCTAGATTGAATGGTAATCCTGTTGACATTCCTAACAAAACTAGACGACTATCAATGGATGCTAGAATTGAAAATTTCCATGCTGGAAGCTCAGCAGATGGTCTGACAAGGGGTCTTGGTTCTGAGAAAAAGCGACATAGTGTGTCTGGTTTTACTCCTCAACATACACATTTCCAAGCCACTGATAAGATTAAGATGAATGAGAGGCAAATTTTGGGTAAAGGCCGGAAAGAAATTGGAGAGATATGGTTAGAGGTGCTTGAGAGAATACAAGTTACTGGTCTGAAAGAGTTTCTGTTTAAAGAAGGCAAGCTGATCTCTGTTAGTTTTGGGGCAGTTGAAATGGCTAACATTCCTGTGATGCTCACCTTTGGTGGTGTCATAATCAGTGTTAACAATGTTTTACATGAATTCCAGCTAATGTTTAGTTCTCATTTGACCAAATCTACTGCCGAGAAGTTCACAGGCCAAATCTTACAAGCATTTGAATATGTCCTTGGATCTTCTATAACAATAGAAATTAGATGTGAGTCAGGCAAAGATGCTGGATCTGCTGTTCAACAGCCTCCTACATTGCCTGCTACTAATGATTTTCTGTCTCAGATAAGAGACTTTAATGGTGTTGGTTCTCAAGCTCATCCAGCATTAACTGATTCTGTTGAAAAAAGAAGGGGTGAAATTGTAGAAGAAGCATCTTCTCAAGTGGAGCACAAGACTAATGAGCAGCAGGTAGATGCTCATGGAACGTCTTACAGAAAATTAGAAGGTAAAAGTATAGGACAGACATCAGTTTCCCAAAACAAGGCAATTGTTAAGTCACAGTTAGACCAAAAAAAGCTTATGGAGCAAAATCAAAGTCGAAGTCTTGTAAGAAGCAAAGTATCTCTTGCTCATGTAATCCAGCAAGCAGAAGGCCAGAGAAGTGGGTGGTCAAAACGTAAAGCAGTTTCTATTGCTGAGAAGCTTGAACAAGAGAATTTGAGACTGGAGCCAAGATCAAGAAGCTTGCTATGCTGGAAAGCATCAAGAGCAACTCGGCGAAAGCTGTCACGGTTGAAAATTCGTAGTCGAAAACCACGTGCATTGCTGAATCTTGTATCGTGTGGGAAATGTCTGTCTACAAAATCTCCGAGGTAG 3642 0.4286 MTRAVRSRVLKDANGDISDHLRNHIHLTNCIHLKNHMHKNSPILADRSIMRDLVVLQRSRSLRDPSASPPSWHSPSVVDMLFKRVENDAASQGGRRSVGVERRKEGRRLSGTSPPLVSIASSRVAPGEIGRGTDGITAPSERSSRSGVGDGRRVGREESGRRNEKPDFLDVNQEDPLNQAGKSLADDVISRHSESKDRKSKQRGKNVRDSQVKTLSEQLNDVPLDSDDLASTNIHFRGRFPRQEKIIEEADSRVRSSGSGMNRGKRRKFRSARRTRVATTSREIGAENELSVASNSIAQASAHQKYHLEGADEFADDNVTRAPKNGCGIPWNWSRIHHRGKTFLDMAGRSLSCGLSDTRLKKGTFADNGRHISEMPVASEHSSSYTKSDAEALPLLVEASVSHASTENACWDHDYSGELGLFGDNLFKRDVDSDLASEARSGDQRKLRGNRHSRHQSLTQKYMPRTFRDMVGQNLVAQALSNAVMKRKVGLLYVFYGPHGTGKTSCARIFARALNCNSSEHPKPCGFCNYCIAHDMGKSRNIKEVGPVSNFDFESIMDLLDNMIVSQLPSHYRVFIFDDCDTLSTDCWNAISKVIDRAPRRVVFILVSSSLDVLPHIIISRCQKFFFPKLKDADIIHTLQWIATKEGLEIEKDALKLIASRSDGSMRDAEMTLEQLSLLGQRISVPLVQELVGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGTYDFTKERRRRKFFRRQPLSKEDMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQYVLPTSSDNSFNHSPFTLKDADAREAARLNGNPVDIPNKTRRLSMDARIENFHAGSSADGLTRGLGSEKKRHSVSGFTPQHTHFQATDKIKMNERQILGKGRKEIGEIWLEVLERIQVTGLKEFLFKEGKLISVSFGAVEMANIPVMLTFGGVIISVNNVLHEFQLMFSSHLTKSTAEKFTGQILQAFEYVLGSSITIEIRCESGKDAGSAVQQPPTLPATNDFLSQIRDFNGVGSQAHPALTDSVEKRRGEIVEEASSQVEHKTNEQQVDAHGTSYRKLEGKSIGQTSVSQNKAIVKSQLDQKKLMEQNQSRSLVRSKVSLAHVIQQAEGQRSGWSKRKAVSIAEKLEQENLRLEPRSRSLLCWKASRATRRKLSRLKIRSRKPRALLNLVSCGKCLSTKSPR 1213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00809 1213 FunFam DNA polymerase III subunit gamma/tau 631 693 - -
Vimu2g00809 1213 FunFam DNA polymerase III subunit gamma/tau 452 629 - -
Vimu2g00809 1213 CDD HLD_clamp_pol_III_gamma_tau 630 693 IPR045085 -
Vimu2g00809 1213 Pfam DNA polymerase III, delta subunit 473 630 - -
Vimu2g00809 1213 Gene3D - 631 693 - -
Vimu2g00809 1213 NCBIfam DNA polymerase III subunit gamma/tau 456 804 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Vimu2g00809 1213 SMART AAA_5 489 630 IPR003593 GO:0016887
Vimu2g00809 1213 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 459 859 - -
Vimu2g00809 1213 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 492 677 IPR027417 -
Vimu2g00809 1213 MobiDBLite consensus disorder prediction 88 213 - -
Vimu2g00809 1213 Coils Coil 766 793 - -
Vimu2g00809 1213 MobiDBLite consensus disorder prediction 146 171 - -
Vimu2g00809 1213 Pfam DNA polymerase III subunits gamma and tau domain III 686 804 IPR022754 GO:0003887
Vimu2g00809 1213 MobiDBLite consensus disorder prediction 187 210 - -
Vimu2g00809 1213 Gene3D - 448 627 IPR027417 -
Vimu2g00809 1213 MobiDBLite consensus disorder prediction 251 270 - -
Vimu2g00809 1213 MobiDBLite consensus disorder prediction 438 457 - -
Vimu2g00809 1213 SUPERFAMILY post-AAA+ oligomerization domain-like 701 804 IPR008921 GO:0003677|GO:0006260
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g00809 Vimu-Chr2 4978379 4985134 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g00809 456 754 Core DNA Replication Machinery Family AT1G21690 23.355 2.83e-13 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g00809 - - pvu:PHAVU_006G172900g 2152.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g00809 2 4978379 4985134 Vimu2g00809 2 4978379 4985134 ECH