Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g00805 ATGGGAGCAGTGAGTGATGCAAACCGCACCAGAAAGAAGTCATCATCAAGAGGGCACCACAGGTTTGTGGGGGTTCGACAAAGGCCATCAGGGAGATGGGTGGCAGAGATCAAAGACTCTCTACAGAAGGTCAGGCTTTGGCTGGGAACATTTGACACAGCTGAGGATGCAGCTAGGGCATATGACAATGCTGCTCGAGCCTTGAGAGGTGCCAATGCTAGAACCAACTTTGAATTGCCTGAAGCAACTTCTGGTGATGCTTCTAAGCGTGGTGATGGCGGTGGTTCAACCTTTGTGCCTAATTGCTCTGAACCCTTTTCTTTTGAGGATGTCAATGAGCCAGGTGAAGATGCTGAAGGCCTTCTTGGTGCACTTAAGGCCAAGCTGCTTGATGTAAAGAAAGGAAAGTTTCACTTTCCATTTCTTCCTAATAGTGCTGCTTCCCCACTTGTTCAATCTGGCTGGGTTTCAACATCAACTCAGAATGTTTGTTCCGCGGAGAAAGATTTATTGTTACCATTATCAGCCAGTAATACTGTCCTCTCAAGTATGAATGGAACTGGAGCCAATAACCCTTTACTTGGTCTTACGAGTACTTTAGCAACATCAAACACTTGTTCAAAGAGTGTGGTTATCCCAAATCATGATCATGAAGGTTCTGAAGGAAGAAGTTCTAGAGTCGACTCTCATCAACTTTGTCAAACTCCACCTGAGGCAACATGGTTCAATGAAGTGGCGTATGAGTTGCCTTGGCCTACACAATTTATGAGCCAAGTTCCTGATAATAATAGCCTTCTTGCATCTGCAGCCACCTTGGCATGGCCACATTCTGCGGTGATTGAGTCCACTAGTGATATGGCATGCCCAGATCAAGGGCCTTCAAGTTGCAATAAAAGTGGGCAAATGATGAATATGGTGAGCATGCAGTTACCTCTAGTGGGTGGTGCAACTGAAGGACTTTGGACATTGGAACAACAACAACTTGTGCAATGTGAGAACAACAGTTGGTTTAGTTATAATGGCTCTTGGGATCCTCTCCTCTATATGCCTTCTGAGCTAGCTTGA 1065 0.4554 MGAVSDANRTRKKSSSRGHHRFVGVRQRPSGRWVAEIKDSLQKVRLWLGTFDTAEDAARAYDNAARALRGANARTNFELPEATSGDASKRGDGGGSTFVPNCSEPFSFEDVNEPGEDAEGLLGALKAKLLDVKKGKFHFPFLPNSAASPLVQSGWVSTSTQNVCSAEKDLLLPLSASNTVLSSMNGTGANNPLLGLTSTLATSNTCSKSVVIPNHDHEGSEGRSSRVDSHQLCQTPPEATWFNEVAYELPWPTQFMSQVPDNNSLLASAATLAWPHSAVIESTSDMACPDQGPSSCNKSGQMMNMVSMQLPLVGGATEGLWTLEQQQLVQCENNSWFSYNGSWDPLLYMPSELA 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g00805 354 FunFam ethylene-responsive transcription factor RAP2-11 20 79 - -
Vimu2g00805 354 CDD AP2 21 78 IPR001471 GO:0003700|GO:0006355
Vimu2g00805 354 Pfam AP2 domain 21 70 IPR001471 GO:0003700|GO:0006355
Vimu2g00805 354 Gene3D AP2/ERF domain 20 79 IPR036955 GO:0003700|GO:0006355
Vimu2g00805 354 ProSiteProfiles AP2/ERF domain profile. 21 78 IPR001471 GO:0003700|GO:0006355
Vimu2g00805 354 SMART rav1_2 21 84 IPR001471 GO:0003700|GO:0006355
Vimu2g00805 354 SUPERFAMILY DNA-binding domain 22 78 IPR016177 GO:0003677
Vimu2g00805 354 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 10 142 - -
Vimu2g00805 354 MobiDBLite consensus disorder prediction 1 25 - -
Vimu2g00805 354 PRINTS Ethylene responsive element binding protein signature 44 60 IPR001471 GO:0003700|GO:0006355
Vimu2g00805 354 PRINTS Ethylene responsive element binding protein signature 22 33 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g00805 Vimu-Chr2 4933122 4934186 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g00805 9 77 AP2-EREBP Transcription Factor Family AT5G19790 67.143 1.58e-26 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vimu2g00805 AP2 3.2e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g00805 - - gmx:102661478 496.893